Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq53 125 5e-24 seq136 96.9 2e-15 >seq53 Length=112647 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| ||||| ||||||||||| || ||| |||| |||| Sbjct 69912 AGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGCGTACGGCCGTCT 69971 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| ||||| ||||||||||| || | || ||||||||| Sbjct 69972 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 70031 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | ||| || || || | || ||||| Sbjct 70032 TGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTC 70091 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||| ||||| Sbjct 70092 TTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||| ||| | || || ||||| || |||||||| || Sbjct 69669 CCGCCACGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAG 69728 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || ||||| ||||||||||| || Sbjct 69729 AGTGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGG 69788 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | ||| || || Sbjct 69789 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 69848 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| ||||| || || || || || ||||| ||||| Sbjct 69849 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||||| || || ||||| ||||||||||||||| Sbjct 70125 CCACCACGCAGGCGTAGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70184 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || ||| | || || | ||||||||| ||||| || | |||||||| || || Sbjct 70185 AAGGTG-CGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGG 70243 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | ||||| || ||||| Sbjct 70244 GATACCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGATGACTCGAC 70303 Query 34342 GTCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 70304 TTCGAGAGTGATGGTCTTGCCGGT 70327 >seq136 Length=202766 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| |||||||||||||| Sbjct 67032 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 66973 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || ||||||||||| ||| Sbjct 66972 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 66913 Query 34283 ACGCTCTCCTTGTCGGCTATCTT 34305 | || ||||||||| || |||| Sbjct 66912 ATGCCCTCCTTGTCTGCGCTCTT 66890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070669145280