Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq249 304 1e-77 seq53 118 9e-22 seq50 118 9e-22 >seq249 Length=183263 Score = 304 bits (336), Expect = 1e-77 Identities = 1347/2107 (64%), Gaps = 39/2107 (2%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| | | || | |||| || ||||| |||||| Sbjct 117149 TCTTGGTCGACGGTGAACTGAATGGGGGCCGAAGCAGCCATGGTTCGGAGATAGTACATG 117208 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| ||||| | |||||| || || || || || || | || || | Sbjct 117209 CCGGTCTTGAGACCAAGCTTCCATCCGGCGAAGTGCATGGAGGTGATCTTGCCCATGGTA 117268 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | ||||| | || | |||||| ||| || || || || || || || ||| Sbjct 117269 GGCTCCTTCATGTGGATGTTCAGTGACTGAGACTGGTCAATGAAGGCACCACGGTCAGCG 117328 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | || | |||||| ||| |||||||| || |||||||| | | ||||| Sbjct 117329 GCCATCTGAATGATGGTACGCTGCGAGATTTCCCAGACAGTCTTGTATAAGGTCTTGATC 117388 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || || || ||| | ||||| || || | | ||||| || || Sbjct 117389 TCATCAGGGATGTTGGGGATGCGCTGGATAGAACCACCGTCGGCGATGATGCGGTTCTTC 117448 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 || | ||| |||| | ||| ||| || | ||| |||| || |||| || || Sbjct 117449 ATGTTCTCGGTCCAAAGACCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTGACAACC 117508 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || ||||| || | | || || || ||| ||||| |||||| | || ||||| | Sbjct 117509 TGGAACTCACCAGCGAGCACACGACGAGAGTAGATGTTTGATGTGTATGGCTCGAAGCAC 117568 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| || || ||||| | || || || || ||||| || || | || || ||| Sbjct 117569 TCGTTGTTGCCGAGGATCTGGGAAGTGGAGGCAGTGGGCATAGGTGCAACGAGCAGAGAG 117628 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || | | || |||| || || || ||| ||| | ||| ||||| || |||| Sbjct 117629 TTGCGGACACCATGCTGTGCGATCTTCTCCTTCAGCGAAGCCCAATCCCAGAGGTCGGTA 117688 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAAC--ACGCCGCGACTCGCCGGGCTGCCTT 22700 || || ||| ||||||| || || || | | || | | || | || ||||| Sbjct 117689 GGAGTGACAC---CCCACATGTCATACTGGAGCTGACCCTGAGAAATG--GGCGAGCCTT 117743 Query 22701 CGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGT 22760 ||||||| ||| || ||| | ||| | |||||| | ||| || ||| Sbjct 117744 CGTACGTGGTGTAAGGGCCAAGCTCCTTGGCGATGTCGCAGGAAGAGGTCAAGGCAGCGT 117803 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAA-TTC--GGCGGCGGCGACGCTTTCGTACG 22817 || || ||||||||||| | |||| | ||| ||| ||| || || || | | Sbjct 117804 GGTAGATGGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGCCTCGG-GAGACT--CGAAAG 117860 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||| ||| | | ||| || || || | ||| || || || | |||||| || | || Sbjct 117861 GCAAACGAAGAGCAAGGAAAGCATCGGCAAGACCTTGTACACCCAGACCGATAGGCCTGT 117920 Query 22878 TTTTCAGATTCGACACTTT-TGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | || | || |||||| | ||| || ||| || || | || Sbjct 117921 GACGGAAGTT-GCTACGGCGTGCCTCCTCGACAGGGTAGTGATTGACCTCAATGATCTTG 117979 Query 22937 TTCAAGTTTCTGGTCACA-ATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC 22995 || | ||| | ||| ||| | | | | | |||||| | || || Sbjct 117980 TTGAGGTTGCGGGT-ACAGACCTGCACGACCTCGTGGAGCTTCTTGAAGTCGAACACACC 118038 Query 22996 C-GATTGTA--CAACAAACTTGTTGACGGCG-ATCG--AGGCAAGATTGCATACGGCCAC 23049 | | ||||| |||||||| | || | | | | || || |||| ||||| ||||| || Sbjct 118039 CCGCTTGTAGTCAACAAAC--GATGGCAGAGCAACGGAAGCCAAG-TTGCAAACGGCAAC 118095 Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109 ||| ||| | ||||| || | || || || || || ||| | || || || Sbjct 118096 CTCATCTGGCGCTGTGTATTCGATGATCTCAGTGCACAGGTTGGAGCTGCGAATGGTACC 118155 Query 23110 CAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCC 23169 | || |||||||||| || | ||| | ||||||||| |||||| | || |||| Sbjct 118156 GAGGTTCTTCTGGTTGCTCTTCCTGTTGGCGGCATCCTTGTAAAGCATGAAGGGGTTGCC 118215 Query 23170 CGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCAC 23229 |||||| ||| | ||||| ||| || ||| | | || || | || ||| | | Sbjct 118216 AGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCACGGACG-GTCTCGC 118274 Query 23230 GTACCTGCCT-TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288 | ||| | ||| ||| ||||| | ||||| || | || ||| | ||||| || Sbjct 118275 GACCCTTATTCTCTCTCTCATACTTCTCGTACAGGGCAACGAACTCGTCGCCGTAGACGT 118334 Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA---A 23345 | || || || || | | | || ||||| || ||||| | |||| || | Sbjct 118335 CAGCAAGACCTGGGCACTCGTTGGGGCACATAAGCGTCCACTC---GCCATTCTCCTGGA 118391 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 | || ||| |||||||| || ||||| || || ||||||| ||||| || || |||| Sbjct 118392 CACGCTGCATGAAAAGATCGGGGATCCACAGGGCATAGAACAAGTCGCGAGCACGAACCT 118451 Query 23406 CCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCT 23465 |||| |||||| |||||| |||| || | ||| | || ||||| || ||||| |||| Sbjct 118452 CCTCCTTGCCGTGGTTCTTCCTCAAGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCT 118511 Query 23466 CGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCG 23525 ||||||| | ||| ||||| || || | ||| ||||| ||||| |||||||| ||||| | Sbjct 118512 CGAGGTAGATGGCGAACGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGG 118571 Query 23526 TGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA 23585 |||||||||| || | ||||| || | ||||||||| || | || || | | Sbjct 118572 TGTTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGATGTTCCATTGGTTCCTCCGA 118631 Query 23586 CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCG 23645 | || || | || |||| | ||| || | || ||| || || || | | || | Sbjct 118632 TATAGGAGCCAGTGGCACGAATGCGGTGCACATTGAGACCAATACCGCCAGCAGTCTTGG 118691 Query 23646 ATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCG 23705 | |||| ||| || |||| ||||||||||| || || |||||||| || || | Sbjct 118692 AGATCAACGCACAAGTCTTCAATGTGTCGTAGATACCGTCAATGCTGTCTTCCTTCATGT 118751 Query 23706 CGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGC 23765 ||| | ||| || || |||||||| | || || | || ||| || ||||| Sbjct 118752 CGATGAGGAAGCAAGATGACATTTGTGGGGATGGTGTGCCCGCGTTGAAGAGCGTCGGCG 118811 Query 23766 TGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATCAATG 23824 ||||| || ||||| | |||||| ||| | ||| || |||||||| |||||| Sbjct 118812 ACGCGTGTGTGAAGTACTTTTGCGACATGTAG-TCGTATGTCTCGATGGCCTTCTCAATG 118870 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTG 23884 ||||| ||| ||||| | ||||||||||| | ||||| || || | ||| | Sbjct 118871 TCCTCCATGTGGATACCAACAGCGACGCGCATGAGCATGTGCTGTGGGCGTTCGGCAACT 118930 Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 ||||| || || |||||||| || | || || || || || || | | ||| Sbjct 118931 TTTCCGTTGATGCGGAGGAGATATGAGCGCTCCAGTGTCTTGAAGCCGAAGAACTGGTAG 118990 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATG 24004 ||||||||||| |||| || ||||| || | | |||| | | |||||| Sbjct 118991 TTAAAGTCACGGTCGTAGACGATGGCGCTGTTGAGCTCATCGGCATGGTCCTGGATGATC 119050 Query 24005 TTGTAATGAAAATTCGATATCATCGGCGTTTTAACGCCGGTCTTTGGATCGATCGCTTCA 24064 ||||| | ||| ||||| ||| | |||| |||| |||| ||| | Sbjct 119051 TTGTAGACTCTGTCCGAGATCATGGGCTGGCTCTTGCCGTTCTTGGGATTGATATATGTG 119110 Query 24065 TACATATCGATAATGACATC-GAAAAAAGAATCTTTAGTCTCCTTGTGCAAATTAGACAC 24123 || | ||| | ||| | || || | ||||| |||| |||||| | || || || Sbjct 119111 TAAAGGTCGTGGACGACGGCAGAGAACTGCTTCTTT-GTCTGCTTGTGGAGGTTGGAGAC 119169 Query 24124 GGCCAATCTAGCCGCAAGCAACGAATAGTCGGAATGATCGATGGTCATGGCCGCTGCCGT 24183 ||| | | || ||||| | | ||||||| ||| | |||||||| ||||| || Sbjct 119170 GGCGATACGCGCGGCAAGGATGGCGTAGTCGGGATGTGTGGTGGTCATGTATGCTGCTGT 119229 Query 24184 CTCGGCG 24190 ||||||| Sbjct 119230 CTCGGCG 119236 >seq53 Length=112647 Score = 118 bits (130), Expect = 9e-22 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||||||||| || || ||| | || ||||| |||| Sbjct 70123 ATGCAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCG 70064 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| ||| | || || |||||| Sbjct 70063 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 70004 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 |||||||| || |||||||| || ||| ||||||| | || | |||| | || || Sbjct 70003 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACG-CTATCA--GACTAC 69947 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| ||||| || ||||||| Sbjct 69946 AACATCCAGAAGGAATCTACTCTCCACTTGGTACT 69912 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||||||||| || || ||| | || ||||| |||| Sbjct 69895 ATGCAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCG 69836 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || ||||||||| ||| | || || |||||| Sbjct 69835 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 69776 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| |||| || | || | || || || Sbjct 69775 CAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACACTCTCGGACTACAAT 69716 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| || || |||| ||| | ||| | ||||| Sbjct 69715 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTGCGTGGCGG 69669 >seq50 Length=575836 Score = 118 bits (130), Expect = 9e-22 Identities = 295/441 (67%), Gaps = 14/441 (3%) Strand=Plus/Minus Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 || |||||| | | || | || || ||||||||||| || || ||||| || Sbjct 303633 ACCTTCGCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCG 303574 Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 || ||| | || || ||| ||||||| || || ||||||||||| || || ||| || Sbjct 303573 TTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTTTCTAAT 303514 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || || |||||||| | || || || ||||| || || ||| ||||| Sbjct 303513 GAGCTCATTTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGTCTGTTGTTCTCTC-- 303456 Query 58140 ATTGTCAATAAAC--CGACGC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCG 58196 | |||| || | | | || ||| | || ||| ||||||||||| |||| | Sbjct 303455 -TGCTCAACAACCGTCCAAGCAAAGATGCTGTGCAGGCCATCATCACCGAGGCCGTCGAG 303397 Query 58197 ATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGAT 58256 || || | ||||| | |||| || || || || | |||||||||||| | | Sbjct 303396 ATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCACTACTCGGTATGAACGCTACT 303337 Query 58257 TTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAG 58316 | |||| ||||||| ||||| || |||||| | || | || | || |||| | Sbjct 303336 CTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTGCTCCTGG--CT-CTTGGCAAC 303280 Query 58317 C----GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGG 58372 | || | |||||| ||| || || || || || ||| | |||||||| | || Sbjct 303279 CCCAAGT-ACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCCGG 303221 Query 58373 CAAGACAAACTTTTTCGAAAA 58393 |||||| ||||| ||||| || Sbjct 303220 CAAGACCAACTTCTTCGAGAA 303200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764516636960