Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq50 105 7e-18 seq249 91.5 1e-13 seq53 82.4 8e-11 >seq50 Length=575836 Score = 105 bits (116), Expect = 7e-18 Identities = 241/362 (67%), Gaps = 13/362 (4%) Strand=Plus/Minus Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764 |||||||| || || ||| || ||| | || || || ||||| || ||||||||||| Sbjct 303537 ATGCCCGGTCTTACCTTTTCTAATGAGCTCATTTCTCGTGACGAGGGCATGCACACAGAC 303478 Query 52765 TTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTA 52824 ||||| ||| ||| | | || | || || ||| | | ||| || || Sbjct 303477 TTTGCTTGTCTGTTGTTCTCTCTGCTC-------AACAACCGTCCAA-GCAAAGATGCTG 303426 Query 52825 -----GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTAC 52879 | ||| | | ||||||||||| ||||| | ||||| | | || ||| | | Sbjct 303425 TGCAGGCCATCATCACCGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCC 303366 Query 52880 CCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGG 52939 || || | | || |||||||| || | |||||| ||||||||||||| || || | Sbjct 303365 CCTGCGCACTACTCGGTATGAACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCCG 303306 Query 52940 ACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGT 52999 || | ||| | || || || | || || ||||| || ||| |||||||| | Sbjct 303305 ACCGTCTGCTCCTGGCTCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACT 303246 Query 53000 TTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGT 53059 | ||| | ||||| ||||| | ||||| || ||||| ||||||| ||||| || || | Sbjct 303245 TCATGGAGAACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATT 303186 Query 53060 AC 53061 || Sbjct 303185 AC 303184 >seq249 Length=183263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 387/601 (64%), Gaps = 13/601 (2%) Strand=Plus/Plus Query 153912 GGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAAT 153971 || || |||||||| ||||| || | ||| |||||| || || || || |||| || Sbjct 118346 GGGCACTCGTTGGGGCACATAAGCGTCCACTCGCCATTCTCCTGGACACGCTGCATGAAA 118405 Query 153972 ATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATG 154031 | |||||| | ||| ||||| | | || |||||| || || || |||| | Sbjct 118406 AGATCGGGGATCCACAGGGCATAGAACAAGTCGCGAGCACGAACCTCCTCCTTGCCGTGG 118465 Query 154032 TTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCT 154091 || | || || | || | | | | ||| ||||| || || | ||| | || Sbjct 118466 TTCTTCCTCAAGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCG 118525 Query 154092 TGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACC 154148 || || |||||| || ||||| | |||| || | | |||||| | || Sbjct 118526 AACGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGTAGACA 118585 Query 154149 CGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGG 154208 |||||||| || | |||||| | | || || || || | || | | | | Sbjct 118586 CGAAGCATAGGGATGAGACCGTTCGATGTTCCATTGGTTCCTCCGATATAGGAGCCAGTG 118645 Query 154209 CCTCGAACGCTGTTTACGTTTAATCCAATACCGCC-GCCGTGTTTGGAGATCATGGCGCA 154267 | |||| || || || || | ||||||||||| || || |||||||||| || || Sbjct 118646 GCACGAATGCGGTGCACATTGAGACCAATACCGCCAGCAGT-CTTGGAGATCAACGCACA 118704 Query 154268 ATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAAC 154326 | |||||||||| |||||||| |||||| || | ||| ||| || ||||| | Sbjct 118705 AGTCTTCAATGTGTCGTAGATACCGTCAATGCTGTCTTCCTTCAT-GTCGATGAGGAAGC 118763 Query 154327 ATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGT 154386 | || ||| || || | ||| ||||| || || | ||||| ||||| ||| Sbjct 118764 AAGATGACATTTGTGGGGATGGTGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTGTGTGA 118823 Query 154387 ACATCTTTGTGC-TCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCA--A 154443 | |||| ||| || | | || | || ||||| || |||||||| ||||| Sbjct 118824 AGTACTTT-TGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCAATGTC--CTCCATGT 118880 Query 154444 AGATACCTAGAGCTATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAA 154503 |||||| | ||| | |||||| ||||||| || | ||||||||||||| |||| | Sbjct 118881 GGATACCAACAGCGACGCGCATGAGCATGTGCTGTGGGCGTTCGGCAACTTTTCCGTTGA 118940 Query 154504 T 154504 | Sbjct 118941 T 118941 >seq53 Length=112647 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || ||| ||||||| || ||||| |||||||| |||||||| ||| Sbjct 70481 TCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTG 70540 Query 139670 TCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||||||| | ||||||||| | ||| | Sbjct 70541 TCC-TGAATCTTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 70599 Query 139729 CGTCTTGCCGGT 139740 |||||||||||| Sbjct 70600 CGTCTTGCCGGT 70611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061904129600