Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq50 205 1e-47 >seq50 Length=575836 Score = 205 bits (226), Expect = 1e-47 Identities = 582/891 (65%), Gaps = 75/891 (8%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| ||||||| ||| Sbjct 304071 TGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTCTCC 304012 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||||||| |||| ||| | | || | | || ||||| || || || ||| Sbjct 304011 AAGGACCTGCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCCCAC 303952 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | || ||||| || | ||||||||| ||||||||||| ||||| || || || || Sbjct 303951 GTCCTCGCTTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAATCTCGTCGA-GCGGTT 303893 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTG 125259 |||| ||| | ||||| || | ||| ||||| ||||| ||||| |||||||| | Sbjct 303892 CTCTGGTGAGGTACAAATTCCCGAAG-CTCGATGCTTCTACGGTTTCCAGATCATGATGG 303834 Query 125260 AGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAAC 125319 | ||||| ||| | || | |||||| ||||| |||| ||||| |||| || || Sbjct 303833 AAAACGTCCACGCCGAGACATACTCTCTCCTGATCGACACATACATCAGCGAGCCCAGAC 303774 Query 125320 -GTAAACACATGCTCTTTAACGCAATCGAC-ACGGT------GCCGTCT----------- 125360 | ||| || ||||| ||||| || ||| || || ||| ||| Sbjct 303773 AGCGCACATAT-CTCTTCAACGCCATTGACAACAGTAAGTCGGCCATCTGTACGCAACAA 303715 Query 125361 ------------------------------ATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || || ||||| | |||| | || Sbjct 303714 GATACCTCGACTGACATTCTAGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTACGA 303655 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 |||||| ||| | || ||| | | |||| || | || || || || |||||||| ||| Sbjct 303654 TGGATCTCGGACAAGAACTCTACCTTCGCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAG 303595 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| || || ||| ||||||| ||||| |||||||| || || ||| Sbjct 303594 GGCATCTTCTTCAGTGGATCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATG 303535 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 ||||| || || ||| ||| | || ||||| ||||||||| | ||| |||||| Sbjct 303534 CCCGGTCTTACCTTTTCTAATGAGCTCATTTCTCGTGACGAGGGCATGCACACAGACTTT 303475 Query 125571 GCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGG 125628 || ||| |||| || | || | | | || || |||| | || ||| Sbjct 303474 GCTTGTCTGTTGTTCTCTCTGCTCAACAACCGTCCAAGCAAAGAT-----GCTGTGCAGG 303420 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 ||||| | ||||| ||||| ||| || || ||||| || |||| | || | Sbjct 303419 CCATCA------TCACCGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCT-C 303367 Query 125689 CGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 | | ||| | | || |||||| | || |||||| ||||||| ||||| || || Sbjct 303366 CCCTGCGCACTACTCGGTATGAACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCC 303307 Query 125748 GATCGTCTACTGTACGAGTTGATTGG---CCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || ||||| || | | |||| || |||| |||||||| | || ||||| Sbjct 303306 GACCGTCTGCT---CCTGGCTCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTC 303250 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || |||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 303249 GACTTCATGGAGAACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAG 303199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056069024880