Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq53 122 2e-22 >seq53 Length=112647 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| ||||| || | |||||||| || || || ||| Sbjct 69927 GTAGATTCCTTCTGGATGTTGTAGTCTGATAGCGTACGGCCGTCTTCCAGCTGCTTACCA 69986 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || || || || || ||||||||||| | || Sbjct 69987 GCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 70046 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| || ||||| ||||| || || || || Sbjct 70047 ACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGGTC 70106 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 70107 TTGACGAAGATTTGCAT 70123 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || || || | ||| || || || || || ||| Sbjct 69699 GTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTGCGACCATCCTCCAGCTGCTTACCA 69758 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || || || || || ||||||||||| | || Sbjct 69759 GCAAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 69818 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || ||||| || ||||| ||||| || || || || Sbjct 69819 ACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGGTC 69878 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 69879 TTGACGAAGATTTGCAT 69895 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || || | || || || ||||| ||||| ||||| Sbjct 70406 ATACCACCACGTAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCC 70465 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || || || || || ||||| || || | ||| || || ||| Sbjct 70466 GAAAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGA 70525 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| || ||||||||| ||||| || || || || | ||| ||| || || Sbjct 70526 GGAATGCCTTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTC 70584 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || || || ||||| || || Sbjct 70585 CACCTCGAGGGTGATCGTCTTGCCGGT 70611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393413725304