Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq249 352 7e-92 >seq249 Length=183263 Score = 352 bits (390), Expect = 7e-92 Identities = 1166/1792 (65%), Gaps = 46/1792 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| ||||| || || || || ||||| || | ||| ||| Sbjct 118980 TTCGGCTTCAAGACACTGGAGCGCTCATATCTCCTCCGCATCAACGGAAAAGTTGCCGAA 118921 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 ||||| ||||| ||| | ||||| || ||| |||||||||| ||| |||| Sbjct 118920 CGCCCACAGCACATGCTCATGCGCGTCGCTGTTGGTATCCACATGGAGGACATTGAGAAG 118861 Query 363511 GCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAA 363568 || || || ||||| | || | | || || ||| ||||| ||||| |||| || Sbjct 118860 GCCATCGAGACATACGA-CTAC-ATGTCGCAAAAGTACTTCACACACGCGTCGCCGACGC 118803 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | ||||| ||||| |||||||| || | | ||||||| Sbjct 118802 TCTTCAACGCGGGCACACCATCCCCACAAATGTCATCTTGCTTCCTCATCGACATGAAGG 118743 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||| || ||||||| |||||| | |||| |||||| | || ||||||| || Sbjct 118742 AAGACAGCATTGACGGTATCTACGACACATTGAAGACTTGTGCGTTGATCTCCAAGACTG 118683 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGC 363747 | ||||| |||||| | | ||| ||||||| || | | || || | || Sbjct 118682 CTGGCGGTATTGGTCTCAATGTGCACCGCATTCGTGCCACTGG-CTCCTATATCGGAGGA 118624 Query 363748 ACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGG 363807 || ||| ||||| || || | || ||||||||||| | |||| || || | Sbjct 118623 ACCAATGGAACATCGAACGGTCTCATCCCTATGCTTCGTGTCTACAACAACACCGCCCGC 118564 Query 363808 TACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCAT 363867 ||||||||||||||||| |||||| || ||||| || || || |||||||| Sbjct 118563 TACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCATGG 118504 Query 363868 CATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGT 363927 || || || | || | || || || | |||| ||| || || ||||| | ||| Sbjct 118503 CACGCTGACGTCTTCGGCTTCCTCGACTTGAGGAAGAACCACGGCAAGGAGGAGGTTCGT 118444 Query 363928 GCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT---GGAG 363984 || || || |||||||||| || ||| | | || | ||| ||| |||| || |||| Sbjct 118443 GCTCGCGACTTGTTCTATGCCCTGTGGATCCCCGATCTTTTCATGCAGCGTGTCCAGGAG 118384 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 || || ||| | || | ||||| |||| || ||||||||| | || || | Sbjct 118383 AATGGCGAG---TGGACGCTTATGTGCCCCAACGAGTGCCCAGGTCTTGCTGACGTCTAC 118327 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || ||||| | ||||| || ||||| |||||||| ||| |||| ||| |||| Sbjct 118326 GGCGACGAGTTCGTTGCCCTGTACGAGAAGTATGAGAGAGAGAATAAGGGTCGCGAGACC 118267 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 | | || || ||||| |||| ||||||| | || | |||| ||||| || | ||| Sbjct 118266 GTCCGTGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCC 118207 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||| | ||||| ||| | |||| | ||| ||||||| || |||| ||||| ||| Sbjct 118206 TTCATGCTTTACAAGGATGCCGCCAACAGGAAGAGCAACCAGAAGAACCTCGGTACCATT 118147 Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | |||| |||||| || || ||||| || |||||||| || || || ||| |||||| Sbjct 118146 C-GCAGCTCCAACCTGTGCACTGAGATCATCGAATACACAGCGCCAGATGAGGTTGCCGT 118088 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG-----TAAAAG-ATGGTACTTTTGA 364337 || ||| | || || | || || || |||||| || ||| ||| || || Sbjct 118087 TTGCAACTTGGCTTCCGTTGCTCTGCCATCGTTTGTTGACTACAAGCGGGGTGTGTTCGA 118028 Query 364338 CCACCAGCATCTTTATGACGT--AACCTATCATGCTACTTGCAATCTCGACAAGGTTATC 364395 | | || | || | || || | || || ||| |||| ||| ||||| | || Sbjct 118027 CTTCAAGAAGCTCCACGAGGTCGTGCAGGTC-TG-TACCCGCAACCTCAACAAGATCATT 117970 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATT 364455 || ||| | || || | || || ||| || | ||||| | || || Sbjct 117969 GAGGTCAATCACTACCCTGTCGAGGAGGCACGCCGTAGCAACTTCCGTCACAGGCCTATC 117910 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGATGGCATTT-GATT 364513 ||||| |||||||| || || || || | ||| | ||||| | | || ||| || | Sbjct 117909 GGTCTGGGTGTACAAGGTCTTGCCGATGCTTTCCT--TGCTCTTCGTTTGCCTTTCGAGT 117852 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA 364573 | || || || || || | ||||||| || || || || || || ||| Sbjct 117851 CTCCCGAGGCCAAGAAGCTCAACACCCAGATCTTCGAGACCATCTACCACGCTGCCTTGA 117792 Query 364574 CTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTC 364633 | |||| || || | || || || ||| | || || || || || || Sbjct 117791 CCTCTTCCTGCGACATCGCCAAGGAGCTTGGCCCTTACACCACGTACGAAGGCTCGCCCA 117732 Query 364634 TTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACT 364693 |||| ||||| | |||||| ||| | ||| |||||| || | | || ||| | | Sbjct 117731 TTTCTCAGGGTCAGCTCCAGTATGACATGTGGGGTGTCACTCCTACCGACCTCTGGGATT 117672 Query 364694 GGGATACGCTACGTTCCAACGTTAAGA------AGCATGGTACTCGCAACTC---CCTCG 364744 ||| | |||| || | |||| |||||||| |||||||| |||| Sbjct 117671 GGGCTTCGCT------GAAGGAGAAGATCGCACAGCATGGTGTCCGCAACTCTCTGCTCG 117618 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 || || || |||||||| || || ||| | ||||||||||| |||||||||||||||| Sbjct 117617 TT---GCACCTATGCCCACTGCCTCCACTTCCCAGATCCTCGGCAACAACGAGTGCTTCG 117561 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 | || | ||| || | || || || || || || | || || || | ||| || | Sbjct 117560 AGCCATACACATCAAACATCTACTCTCGTCGTGTGCTCGCTGGTGAGTTCCAGGTTGTCA 117501 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924 | | | ||||||||||| |||| || || ||| || | |||||||||| Sbjct 117500 ACCCCTGGTTGCTCAAGGATCTTGTCGACATGGGTCTTTGGACCGAGAACATGAAGAACC 117441 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 |||||||||| ||||||| | ||| ||| || | || || || | ||| Sbjct 117440 GCATCATCGCCGACGGTGGTTCTATCCAGCGCATCCCCAACATCCCTGATGAGATCAAGA 117381 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044 | | ||||| || || |||||||| || ||| || ||||| | ||||| || || | Sbjct 117380 CCTTATACAAGACTGTCTGGGAAATCTCGCAGCGTACCATCATTCAGATGGCCGCTGACC 117321 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCG 365104 | ||||| || || ||| ||||| | ||| | ||||| |||| ||| | Sbjct 117320 GTGGTGCCTTCATTGACCAGTCTCAGTCACTGAACATCCACATGAAGGAGCCTACCATGG 117261 Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| | || |||||||| ||| ||| ||||| ||||| ||||| || Sbjct 117260 GCAAGATCACCTCCATGCACTTCGCCGGATGGAAGCTTGGTCTCAAGACCGG 117209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347955664316