Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq50 141 9e-29 seq53 114 1e-20 seq170 107 2e-18 seq136 102 8e-17 >seq50 Length=575836 Score = 141 bits (156), Expect = 9e-29 Identities = 344/514 (67%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | |||||||| |||||||||| | |||||| || | | | || Sbjct 303690 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTACGATGGATCTCGGACAAGAACTCTACC 303631 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 |||||| | ||| | || |||||||| || |||||| |||| || ||| || Sbjct 303630 TTCGCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCGTTC 303571 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || ||||||| | | || || | || | | |||||||| || || ||| || || Sbjct 303570 GCGTCCATCTTCTGGCTGAAGAAGCGTGGTC-TGATGCCCGGTCTTACCTTTTCTAATGA 303512 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || || || ||||||||| |||| || |||||||| ||||| | | ||| Sbjct 303511 GCTCATTTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGTCTGTTGTT-----CTCT 303457 Query 46326 CGTGCACGACAAGCTTGCGCCC---GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382 | ||| | |||| | | | | || | |||| | ||| ||| ||||| || | Sbjct 303456 C-TGCTCAACAACCGTCCAAGCAAAGATGCTGTGCAGGCCATCATCACCGAGGCCGTCGA 303398 Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-AC 46441 |||||| ||||||| | | | || || ||| || || || || |||||||| || Sbjct 303397 GATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCACTACTCGGTATGAACGCTAC 303338 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 ||| ||||| | ||||||||||| || || ||||| |||||| || ||| | | | Sbjct 303337 TCTCA-TGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTGCTCCTGGCTCTTGGCAACC 303279 Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561 | ||| | | ||||| ||| || || || || ||| | |||||||| || | |||| Sbjct 303278 CCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGCCGGCA 303219 Query 46562 AAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || || ||||| ||||| || || || || Sbjct 303218 AGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 303185 >seq53 Length=112647 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | |||| || |||||||| || |||||||| ||| | Sbjct 70125 CCACCACGCAGGCGTAGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70184 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| || |||||||| || |||||| Sbjct 70185 AAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGG 70244 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||||| Sbjct 70245 ATACCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGATGACTCGACT 70304 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 70305 TCGAGAGTGATGGTCTTGCCGGT 70327 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||| ||||| || || | ||||||||||| || || ||||| || Sbjct 69668 GCCGCCACGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGA 69727 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| |||||||| || || |||| | |||||||||||| || || Sbjct 69728 GAGTGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGG 69787 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | ||||| | ||||| | Sbjct 69788 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAAC 69847 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || ||||| || ||||| Sbjct 69848 CTCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || ||||| || |||||||| || Sbjct 69897 CCACCACGGAGACGGAGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 69956 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | |||||||||||| || ||| Sbjct 69957 AGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 70016 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||| | ||||| | Sbjct 70017 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 70076 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || ||||| || ||||| Sbjct 70077 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 >seq170 Length=170908 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||||||||| || |||||||| ||| Sbjct 129671 CCACCACGGAGACGAAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 129730 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| || |||||||||||||| || Sbjct 129731 AGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 129790 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 129791 ATGCCTTCCTTGTC 129804 >seq136 Length=202766 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||||||||||| || |||||||| ||| Sbjct 67032 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 66973 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 66972 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 66913 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 66912 ATGCCCTCCTTGTC 66899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010805745920