Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 3e-15 >seq53 Length=112647 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || |||| || | || || |||||||| Sbjct 69895 ATGCAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCG 69836 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||| | || | ||| ||||| || || || ||||||||| Sbjct 69835 GATACCATTGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAGGGCATCCCACCTGAC 69779 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || || || | || |||| |||||| | || ||| Sbjct 69778 CAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACACTCTCGGACTAC 69719 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || ||||| || || ||||| Sbjct 69718 AATATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 69684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAA 25078 ||||| || | ||||| |||| |||||||| || ||||| ||||| |||| | Sbjct 70611 ACCGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAG--A 70554 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 |||| | ||| ||||| ||||| ||||| || ||||| ||||| | || |||||||| Sbjct 70553 GCAAGAT-TCAG-GACAAGGAAGGCATTCCTCCCGACCAGCAGCGCCTGATCTTTGCCGG 70496 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 ||| || | || |||| ||| || | || |||||||| || || || ||||| || Sbjct 70495 CAAGCAGCTTGAGGATGGTCGTACCCTTTCGGACTACAATATCCAGAAGGAGTCCACCCT 70436 Query 25199 ACA 25201 || Sbjct 70435 CCA 70433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326214959470