Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq223 127 4e-24 seq50 104 5e-17 seq140 100 6e-16 >seq223 Length=194016 Score = 127 bits (140), Expect = 4e-24 Identities = 172/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||| |||| || ||||||||||||||||| || | | |||||||| || || Sbjct 114985 GTTGGCTCTTTGTCCGGAGGTTGGAAGATGAAGCTTGCTTTGGCGCGCGCCATGCTTATG 115044 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||||| || || ||||| || ||||| ||||||||| |||| | ||||||| ||| Sbjct 115045 CGTGCCGACGTTCTGCTGCTCGACGAGCCTACCAACCACTTGGATGTCGCCAACGTTGCC 115104 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | ||||| | || | | | || | | | || ||||| |||||| Sbjct 115105 TGGCTCCAGGAGTACCTCAAGAGCCACACCGAGATTACCAGCTTGATCGTCTCCCACGAC 115164 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 ||||| ||||| || || || ||| | | |||| ||||| ||||| || |||||| Sbjct 115165 TCTGGGTTCCTCGACGCTGTCTGCACAGACATCTACCACTACGAGCAGAA---GAAGCT 115220 >seq50 Length=575836 Score = 104 bits (114), Expect = 5e-17 Identities = 271/405 (67%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 303203 TCGAAGAAGTTGGTCTTGCCGGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 303262 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | |||||| | |||||| || | || | ||||| || || ||||| | Sbjct 303263 GCGTTGTAGTACTTGGGGTTGCCAAGAGCCAGGAGCAGACGGTCGGCGACGAACTCGATG 303322 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCC-AATCATACGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || || |||||| || | | | || || || | || || | | Sbjct 303323 TACTGGCACATGAGAGTAGCGTTCATACCGAGTAGTGCG-CAGGGGAGAGCATCGGACAG 303381 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-----CTGTGCCAGA 251796 ||| |||| || | | || ||||| | || |||| ||| || ||| | Sbjct 303382 GAACTCCTGCTCAATCTCGACGGCCTCGGTGATGATGGCCTGCACAGCATCTTTGCTTG- 303440 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 ||| | ||||| ||| ||| ||| || |||| | | ||||| |||||| Sbjct 303441 GAC-GGTTGTT---GAGCAGAGAGAACAACAGACAAGCAAAGTCTGTGTGCATGCCCTCG 303496 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| |||| ||| || || | || || ||||||| ||||| ||| | ||| Sbjct 303497 TCACGAGAAATGAGCTCATTAGAAAAGGTAAGACCGGGCATCAGACCACGCTTCTTCAGC 303556 Query 251917 CAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||||| | ||| || |||||| ||| | | |||||||| Sbjct 303557 CAGAAGATGGACGC-GAACGATCCACTGAAGAAGATGCCCTCGAC 303600 >seq140 Length=66074 Score = 100 bits (110), Expect = 6e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || ||||||| ||||| ||||| ||| |||| ||| | | |||||||| | || Sbjct 41820 GCCTATGGTGCTAAGATCCTGCTCAACCAGACCCATCTCCGCCTGAAGCGTGGTCAGCGT 41879 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 |||||||| |||| ||||| || | ||||||| |||||| ||||||||||| ||| Sbjct 41880 TATGGTCTTCTCGGACCCAACGGTTCCGGTAAGACCACTCTCATGCGCGCCATCAACAAC 41939 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGA 279556 | ||| | | ||| ||||| | ||| ||||| | ||| || || || |||||||| Sbjct 41940 GAGCAGGTTG-AGGGTTTCCCCAAGCAGAACGAGGTCAAGACTGTCTACGTTGAGCACGA 41998 Query 279557 CATCGACTC 279565 | | ||||| Sbjct 41999 CTTGGACTC 42007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832348824258