Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq53 158 2e-33 seq50 131 3e-25 seq223 122 2e-22 seq170 104 4e-17 >seq53 Length=112647 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| || ||||| || || || ||| Sbjct 69669 CCGCCACGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAG 69728 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||| || | |||||| || || || ||||| | || ||||| ||||| Sbjct 69729 AGTGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGG 69788 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| || ||||| || | || || || Sbjct 69789 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 69848 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || |||||||||||||| || ||||| Sbjct 69849 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||| || || || || || |||||||| || || || Sbjct 69897 CCACCACGGAGACGGAGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 69956 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || ||||| ||||| Sbjct 69957 AGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 70016 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| || ||||| || | || || || Sbjct 70017 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 70076 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || |||||||||||||| || ||||| Sbjct 70077 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || ||||| || || || || Sbjct 70409 CCACCACGTAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAA 70468 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || |||||||| ||| Sbjct 70469 AGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGA 70528 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| ||||||| ||||||||||| | || || || Sbjct 70529 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 70588 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 70589 TCGAGGGTGATCGTCTTGCCGGTGA 70613 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | |||||| |||||||| || |||||||| || ||||| Sbjct 70125 CCACCACGCAGGCGTAGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70184 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || ||||| || | | || || || || || Sbjct 70185 AAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGG 70244 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| ||||||| |||||||| || | ||| || ||| Sbjct 70245 ATACCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGATGACTCGACT 70304 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||||| || || || Sbjct 70305 TCGAGAGTGATGGTCTTGCCGGT 70327 >seq50 Length=575836 Score = 131 bits (144), Expect = 3e-25 Identities = 322/476 (68%), Gaps = 18/476 (4%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 303166 CATGACACCGGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGGC 303225 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| ||| | | |||||||| || Sbjct 303226 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTGGGGTTGCC 303285 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | ||||| || ||||||||||||||||||| ||| || | ||| Sbjct 303286 AAGAGCCAGGAGCAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGAGTAGCGTT 303345 Query 10115 CATGCC-AATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||| || | | ||| |||||||| || ||| | | ||| |||| || | |||| | Sbjct 303346 CATACCGAGTAGTGC-GCAGGGGAGAGCATCGGACAGGAACTCCTGCTCAATCTCGACGG 303404 Query 10174 CTTCCTCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 | || || |||| || || | || |||| | ||||| |||| || Sbjct 303405 CCTCGGTGATGATGGCCTGCACAGCATCTTTGCTTGGAC-GGTTGTT---GAGCAGAGAG 303460 Query 10230 TACAGGAGCTCTCCAAACTGCTG-GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 ||| || |||| | ||| ||| | ||||||||| || |||| ||| || || Sbjct 303461 AACAACAGACAAGCAAAGT-CTGTGTGCATGCCCTCGTCACGAGAAATGAGCTCATTAGA 303519 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACC 10347 || ||||||||||| || || || || ||||||||| |||| ||| |||||| | Sbjct 303520 AAAGGTAAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGACGC-GAACGATC 303578 Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 | || |||||| ||||| ||| | |||| ||||| || | ||||||| Sbjct 303579 CACTGA--AGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGACGGTTGGCGAAGG 303632 >seq223 Length=194016 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || || | | ||| || ||||| ||||| |||||||||||||| Sbjct 115214 TTCTGCTCGTAGTGGTAGATGTCTGTGCAGACAGCGTCGAGGAACCCAGAGTCGTGGGAG 115155 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTG 225529 || || | | | | | || ||| |||||||| | |||||| || |||||| Sbjct 115154 ACGATCAAGCTGGTAATCTCGGTGTGGCTCTTGAGGTACTCCTGGAGCCAGGCAACGTTG 115095 Query 225530 CTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATG 225589 ||| |||| |||||| ||||| ||||| || ||||| | ||| ||| || || ||| Sbjct 115094 GCGACATCCAAGTGGTTGGTAGGCTCGTCGAGCAGCAGAACGTCGGCACGCATAAGCATG 115035 Query 225590 GCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 ||||||| | || |||||||| ||||| || ||||||| ||||| Sbjct 115034 GCGCGCGCCAAAGCAAGCTTCATCTTCCAACCTCCGGACAAAGAGCC 114988 >seq170 Length=170908 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || |||||||| || ||||| Sbjct 129671 CCACCACGGAGACGAAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 129730 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || ||||| || ||| Sbjct 129731 AGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 129790 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||||||||||||| || ||||| | |||||| Sbjct 129791 ATGCCTTCCTTGTCCTGGATCTTGGACTTGAC 129822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618506145360