Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq50 253 4e-62 seq249 250 5e-61 >seq50 Length=575836 Score = 253 bits (280), Expect = 4e-62 Identities = 380/526 (72%), Gaps = 29/526 (6%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 ||||||||| |||||||| |||||||| || |||||| | | | || | | || Sbjct 303690 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTACGATGGATCTCG-GACAAGAACTCTAC 303632 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | | || || |||||| ||||||||||||||||||||||| || | || Sbjct 303631 CTTCGCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCGTT 303572 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||||| ||| || ||| | ||||||||| || ||||| || || | Sbjct 303571 CGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCT-GATGCCCGGTCTTACCTTTTCTAATG 303513 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | ||||| | |||||||| |||| | |||||||| || || ||||||| | Sbjct 303512 AGCTCATTTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGTCTGTTGTTCTC---TC 303456 Query 42871 ACCTCAGGCACAAGCCCTCGAAG----GAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 |||| |||| || || ||| || || | |||||||||||| |||||||| Sbjct 303455 TGCTCA---ACAA-CCGTCCAAGCAAAGATGCTGTGCAGGCCATCATCACCGAGGCCGTC 303400 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCAC 42986 ||||| ||| |||||||||| | | | || ||| | || |||| ||||| | | Sbjct 303399 GAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCACTACTCGGTATGAA-CGC 303341 Query 42987 GAC-CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCT 43045 || ||||||||| |||||||| ||| ||||||||||| ||| || || ||| ||| Sbjct 303340 TACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTGCT---CC---TGGCTCT 303287 Query 43046 ---CAGCCGC---CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTT 43099 || || | ||||||| || | |||||||||||| ||||||||||||||| | Sbjct 303286 TGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCGCT 303227 Query 43100 GGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||||||||||| ||||||||||| || | || |||||| Sbjct 303226 TGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAG 303181 >seq249 Length=183263 Score = 250 bits (276), Expect = 5e-61 Identities = 1107/1726 (64%), Gaps = 79/1726 (5%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||| | ||| || || ||| |||| | || |||||||||||||||||| Sbjct 117158 ACGGTGAACTGAATGGGGGCCGAAGCAGCCATGGTTCGGAGATAGTACATGCCGGTCTTG 117217 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| ||| || || |||||||| || | ||| ||| | ||| Sbjct 117218 AGACCAAGCTTCCATCCGGCGAAGTGCATGGAGGTGATCTTGCCCATGGTAGGCT----- 117272 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||| || || ||| || ||||| |||||| | ||||| | || || Sbjct 117273 ----CCTT---CATGTGGATGTTCAGTGACTGAGACTGGTCAATGAAGGCACCACGGTCA 117325 Query 243917 GCGGCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 |||||||| |||| ||| | ||| || || || | | |||||||| | || ||| Sbjct 117326 GCGGCCATCTGAATGATGGTACG-CTGCGAGATTTCCCAGACAGTCTTGTATAAGGTCTT 117384 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || | || |||| |||| ||| | || || || | |||||| || | Sbjct 117385 GATCTCATCAGGGATGTTGGGGATGCGCTGGATAGAACCACCGTCGGCGATGATGCGGTT 117444 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGT 244091 |||||| ||| |||| || |||| | | || ||| || ||||| | | Sbjct 117445 CTTCATGTTCTCGGTCCAAAGACCCATGTCGACAAGATCCTTGAGCAACCAGGGG----T 117500 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTT-GCTGCTGAGCGGC 244150 | || ||||| ||||| || | ||||| || || ||||| ||| | || || ||| Sbjct 117501 TGACAACCTGGAACTCACCAGCGAGCACACGACGAGAGTAGATGTTTGATG-TGTATGGC 117559 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| || ||| ||||||| || ||||| | ||| ||||| ||||| || | || Sbjct 117560 TCGAAGCACTCGTTGTTGCCGAGGATCTGGGAAGTGGAGGCAGTGGGCATAGGTGCAACG 117619 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCC 244267 |||||| ||| | || || ||| || |||| ||| ||| ||| | || Sbjct 117620 AGCAGAGAGTTGCGGACACCATGC---TG--TGCGA--TCTT--CTCCTTCAGCGAAGCC 117670 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || || || ||||||| | ||| |||||||||||| |||| ||| | |||| Sbjct 117671 CA-ATCCC--AGAGGTCGGTAGGAGTGACACCCCACATGTCATACTGGAGCTGACCCTGA 117727 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 | ||| ||| ||||| || | ||| || || || ||| | | ||| Sbjct 117728 GAAATGGGCGAGCCTTCGTACGTGGTGTAAGGGCCAAGCTCCTTGGCGATGTCGCAGGAA 117787 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 | | ||| |||| ||||||||||||||||||| |||| | | ||||| | Sbjct 117788 GAGGTCAAGGCAGCGTGGTAGATGGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGCCTCG 117847 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | ||| || | | | | ||| | ||||| || || || || || | Sbjct 117848 GGAGACTCGAAAGGCAAACGAAGAGCAAGGAAAGCATCGGCAAGACCTTGTACACCCAGA 117907 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||||| || ||||| || |||| || | || || | | || ||||| ||| | Sbjct 117908 CCGATAGGCCTGTGACGGAAGTTGCTACGGCGTGCCTCCTCG-ACAGGGTAGTGATTGAC 117966 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGT---GATCATGCGGACGACGTCGGCCAGCAGCTG 244623 || || | |||||||||||||||||| || | ||| ||||| ||| ||| || Sbjct 117967 CTCAATGATCTTGTTGAGGTTGCGGGTACAGACC-TGC--ACGACCTCGTGGAGCTTCTT 118023 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGCG 244681 |||||| || | | || || | || || |||||| | || || || Sbjct 118024 GAAGTCGAACAC------ACCC----CGCTTGTAGTCA--ACAAAC--GATGGCAGAGCA 118069 Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 ||| |||| |||||| ||||| ||||| || | ||||| | || ||||| ||| Sbjct 118070 ACGGAAGCCAAGTTGCAAACGGCAACCTCATCTGGCGCTGTGTATTCGATGATCTCAGTG 118129 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || ||||| || ||||| || |||| || || ||| ||| |||| ||| Sbjct 118130 CACAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCGGCA 118189 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 |||||||| ||||||||||| || |||||| ||| || |||||| | | |||| Sbjct 118190 TCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAG 118249 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 || | || ||| ||| |||| |||| |||| ||| || ||||||| Sbjct 118250 AGCTTTTGGGCACGGACGGTCTCGCGACCCTTATTCTCTCTCTCATACTTCTCGTACAGG 118309 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 || |||||||| ||| |||| || | || || |||||| |||||||| || Sbjct 118310 GCAACGAACTCGTCGCCGTAGACGTCAGCAAGACCTGGGCACTCGTTGGGGCACATAAGC 118369 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||||||||| |||| ||| | ||||||||| || ||||||||||| ||||| | | Sbjct 118370 GTCCACTCGCCATTCTCCTGGACACGCTGCATGAAAAGATCGGGGATCCACAGGGCATAG 118429 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 || | ||| | | | ||| ||| ||| ||||||||||| || | ||| | Sbjct 118430 AACAAGTCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAAGTCGAGGAAGCCG 118489 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 |||||||| ||||||| ||||| | ||||| |||| || || || ||||||||||| Sbjct 118490 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAACGCACCAGGGCGCTTGTTGCCA 118549 Query 245162 CCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 |||||||| | | | || ||| |||| ||| || || |||| | | || Sbjct 118550 CCCTGGTCGA----CGTAGCGGGCGGTGTTGTTGTAGACACGAAGCATAGGGATGAGACC 118605 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGAT 245274 ||| || || ||||| || ||| |||| ||| || | | || || ||| || Sbjct 118606 GTTCGATGTTCCATTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGG-TGCACAT 118664 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 || | || | ||||| || ||||||||| | || || |||| | ||||| Sbjct 118665 TGAGA--CCAATACCGCCAGCAGTCTTGGAGATCAACGCACAAGTCTTCAATGTGTCGTA 118722 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG-GGGCT 245393 || || || |||||||| |||||||| || || ||||| || |||| || ||| Sbjct 118723 GATACCGTCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAAGATGACATTTGTGGGGA 118782 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| | ||| || |||||| || || || ||||| || ||||| Sbjct 118783 TGGTG-TGCCCGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTA 118827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335210166880