Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq53 116 9e-21 seq118 87.8 4e-12 >seq53 Length=112647 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | || ||| || ||||| || ||||| | Sbjct 69897 CCACCACGGAGACGGAGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 69956 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || |||||||| |||||||| || | |||| Sbjct 69957 AGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 70016 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || || | ||| ||| || || Sbjct 70017 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 70076 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || ||||| ||||||||||| || ||||| Sbjct 70077 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | ||| ||||| || || || | || || || || ||| Sbjct 69705 TCCTTCTGGATATTGTAGTCCGAGAGTGTGCGACCATCCTCCAGCTGCTTACCAGCAAAG 69764 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | |||||| || || || ||||| || || | || || || Sbjct 69765 ATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 69824 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || || || || || ||||| || ||||| ||||||||| Sbjct 69825 TCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACG 69884 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 69885 AAGATTTGCAT 69895 >seq118 Length=153408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 210/310 (68%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 325948 TCCCTTCCTGGCAACTACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAG 326007 |||||||| | | ||||| || |||||||||| | ||| ||||| | | || Sbjct 147866 TCCCTTCCAGACTTTGACGATGGGAGTGATGAACTCGAGAAGGAAGCCTGGGAGCTTGAG 147925 Query 326008 AAGATTAGGGAAACAGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTC 326067 ||| | ||||| || |||| |||||| |||| | ||| ||| ||| | ||||| Sbjct 147926 AAGGCTCGGGAACTGGCATTGGAGAAAGTTAATGAGTAAACCCTTAATATGACTACCGTC 147985 Query 326068 AACATCCGCGTCGGTCATGATCATCACATGACCGTAACG-AAGCGAGGACGTGTC----- 326121 | ||| || ||||||||||| | ||| ||||| || |||| | |||| Sbjct 147986 ATGATCTTGATCAGTCATGATCATAAGATGGCCGTACCGCAAGC-TCTTCATGTCAGCCA 148044 Query 326122 -TTTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCG 326179 | ||||| |||| | || || ||||||| || |||| | ||| || || || Sbjct 148045 TTGTGTACTCTTTCTTGTGCTGGAGACCGAGAAATTTCTTGATGTTCTG-AATCTCAGCG 148103 Query 326180 TTCTTCGTGATGCTTG-CCACGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGG 326238 |||||| |||| || | ||| ||| ||||| || |||||||| || || || || || || Sbjct 148104 TTCTTCATGAT-CTGGTCCATGGACGCATCTCGAACGTTCAAGAGCTTACCGCGGAGCGG 148162 Query 326239 GAACACTCCA 326248 ||| || ||| Sbjct 148163 GAAGACACCA 148172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649291359164