Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq50 116 8e-21 seq118 84.2 5e-11 >seq50 Length=575836 Score = 116 bits (128), Expect = 8e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || || | || |||| ||| | | ||| ||| | || ||| Sbjct 303417 ATCATCACCGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCA 303358 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | || |||||| || |||||| | ||||||||||| ||||| |||||||| | Sbjct 303357 CTACTCGGTATGAACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTG 303298 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || ||||| | || |||||| | | |||||||| | ||| |||||| Sbjct 303297 CTCCTGGCTCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAG 303238 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACG 243740 ||| |||||| || || || ||||||||||| |||||||| ||||||| || | | Sbjct 303237 AACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAAG 303178 Query 243741 CCCTGGTGTGATG 243753 || ||||| ||| Sbjct 303177 GCC-GGTGTCATG 303166 >seq118 Length=153408 Score = 84.2 bits (92), Expect = 5e-11 Identities = 209/310 (67%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 298069 TCCCTTCCTGGCAACTACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAG 298128 |||||||| | | ||||| || |||||||||| | ||| ||||| | | || Sbjct 147866 TCCCTTCCAGACTTTGACGATGGGAGTGATGAACTCGAGAAGGAAGCCTGGGAGCTTGAG 147925 Query 298129 AAGATTAGGGAAACAGCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTC 298188 ||| | ||||| || |||| |||||| |||| | ||| ||| ||| | ||||| Sbjct 147926 AAGGCTCGGGAACTGGCATTGGAGAAAGTTAATGAGTAAACCCTTAATATGACTACCGTC 147985 Query 298189 AACATCCGCGTCGGTCATGATCATCACATGACCGTAACG-AAGCGAGGACGTGTC----- 298242 | ||| || ||||||||||| | ||| ||||| || |||| | |||| Sbjct 147986 ATGATCTTGATCAGTCATGATCATAAGATGGCCGTACCGCAAGC-TCTTCATGTCAGCCA 148044 Query 298243 -TTTGTACACTTTACCGGTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCG 298300 | ||||| |||| | || || ||||||| || |||| | ||| || || || Sbjct 148045 TTGTGTACTCTTTCTTGTGCTGGAGACCGAGAAATTTCTTGATGTTCTG-AATCTCAGCG 148103 Query 298301 TTCTTCGTGATGCTTG-CCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGG 298359 |||||| |||| || | ||| ||| ||||| || || ||||| || || || || || || Sbjct 148104 TTCTTCATGAT-CTGGTCCATGGACGCATCTCGAACGTTCAAGAGCTTACCGCGGAGCGG 148162 Query 298360 GAACACTCCA 298369 ||| || ||| Sbjct 148163 GAAGACACCA 148172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875223840300