Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq53 105 7e-18 seq170 89.7 5e-13 seq136 84.2 2e-11 >seq53 Length=112647 Score = 105 bits (116), Expect = 7e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||||| | || | |||||| || || || || ||||| || | | Sbjct 69669 CCGCCACGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAG 69728 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||| || ||| | ||||| ||||||||||| || || Sbjct 69729 AGTGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGG 69788 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCA 64394 || || || || || || || || ||| ||| || | |||| ||| || || | Sbjct 69789 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTAT--CCGACGACTCAA 69846 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| |||| || || ||||| |||||||| Sbjct 69847 CCTCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| |||| | || || ||||||| |||||||| || Sbjct 69927 GTAGATTCCTTCTGGATGTTGTAGTCTGATAGCGTACGGCCGTCTTCCAGCTGCTTACCA 69986 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| || || || || || || || || || || ||| Sbjct 69987 GCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 70046 Query 64367 ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 ||| || | |||| ||| || || || || | || | ||||||||| |||| | Sbjct 70047 ACATTGTCAATGGTAT--CCGACGACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGG 70104 Query 64425 TTTTTACGAAAATTTGCAT 64443 | || ||||| |||||||| Sbjct 70105 TCTTGACGAAGATTTGCAT 70123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || || ||||| || | | ||| || | || ||||||||||||||| Sbjct 70439 GTGGACTCCTTCTGGATATTGTAGTCCGAAAGGGTACGACCATCCTCAAGCTGCTTGCCG 70498 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || || |||||||||||||||||||| ||||| || || || || || Sbjct 70499 GCAAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGAATCTT 70551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | || || || || || |||||||| || | Sbjct 70124 ACCACCACGCAGGCGTAGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 70183 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| ||||||||||| || | || | |||||||| || ||||| Sbjct 70184 CAAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGG 70243 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | ||||| | || || Sbjct 70244 GATACCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGATGACTCGAC 70303 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 ||| | ||| | |||||||||||||| Sbjct 70304 TTCGAGAGTGATGGTCTTGCCGGTCA 70329 >seq170 Length=170908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||| || || || |||||||| || | | |||||| |||| Sbjct 129685 AAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCGTC 129744 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||||| | || | ||||||||||| || ||||| ||||| || || Sbjct 129745 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTC 129804 Query 64351 TTGTATTTT 64359 || || || Sbjct 129805 CTGGATCTT 129813 >seq136 Length=202766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | |||||| || || || |||||||| || | Sbjct 67033 ACCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 66974 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 66973 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 66914 Query 64336 AATTCCTTCTTTTTCT 64351 ||| || || || ||| Sbjct 66913 AATGCCCTCCTTGTCT 66898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642689000720