Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq249 206 3e-48 >seq249 Length=183263 Score = 206 bits (228), Expect = 3e-48 Identities = 445/663 (67%), Gaps = 2/663 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||| | |||||| || |||||| || || |||||| || | || Sbjct 118992 AACTACCAGTTCTTCGGCTTCAAGACACTGGAGCGCTCATATCTCCTCCGCATCAACGGA 118933 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| |||| || || || || |||| ||||||||||| | || || ||| | Sbjct 118932 AAAGTTGCCGAACGCCCACAGCACATGCTCATGCGCGTCGCTGTTGGTATCCACATGGAG 118873 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | | ||| | || || Sbjct 118872 GACATTGAGAAGGCCATCGAGACATACGACTACATGTCGCAAAAGTACTTCACACACGCG 118813 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| || ||||||||||| || || ||||| ||||| || || ||||| || Sbjct 118812 TCGCCGACGCTCTTCAACGCGGGCACACCATCCCCACAAATGTCATCTTGCTTCCTCATC 118753 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| ||| || | ||||| | ||| |||||| || Sbjct 118752 GAC-ATGAAGGAAGACAGCATTGACGGTATCTACGACACATTGAAGACTTGTGCGTTGAT 118694 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| ||| ||| | | ||||||| || ||||| Sbjct 118693 CTCCAAGACTGCTGGCGGTATTGGTCTCAATGTGCACCGCATTCGTGCCACTGGCTCCTA 118634 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| | || |||||||| || || ||||| ||| |||||||||| || |||| |||||| Sbjct 118633 TATCGGAGGAACCAATGGAACATCGAACGGTCTCATCCCTATGCTTCGTGTCTACAACAA 118574 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||||||||| | | | ||| | ||||| |||| || Sbjct 118573 CACCGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCT 118514 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| ||||| | ||| ||||| || | |||||||||||||| || Sbjct 118513 CGAGCCATGGCACGCTGACGTCTTCGGCTTCCTCGACTTGAGGAAGAACCACGGCAAGGA 118454 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | ||| | ||||| || || ||| | || || ||||| ||| | || Sbjct 118453 GGAGGTTCGTGCTCGCGACTTGTTCTATGCCCTGTGGATCCCCGATCTTTTCATGCAGCG 118394 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| || | || || |||| ||| | || ||||| || || || || || | || Sbjct 118393 TGTCCAGGAGAATGGCGAGTGGACGCTTATGTGCCCCAACGAGTGCCCAGGTCTTGCTGA 118334 Query 94374 CGT 94376 ||| Sbjct 118333 CGT 118331 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| || || || |||||||| |||||||| | |||||||| ||||||||| Sbjct 117630 AACTCTCTGCTCGTTGCACCTATGCCCACTGCCTCCACTTCCCAGATCCTCGGCAACAAC 117571 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| || | ||| || ||| | ||| | || |||||||| || || ||| Sbjct 117570 GAGTGCTTCGAGCCATACACATCAAACATCTACTCTCGTCGTGTGCTCGCTGGTGAGTTC 117511 Query 95209 CCCGTCATCAACAAGCACCTCCT-ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAA 95267 | || ||||| | || | || | || || | ||||| | ||| || || Sbjct 117510 CAGGTTGTCAACCCCTGGTTGCTCAAGGATCTTGTCGAC-ATGGGTCTTTGGACCGAGAA 117452 Query 95268 GGTCAAGAACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGCAAATACC 95324 | ||||||| | | |||| || || || ||||| |||||| | || || Sbjct 117451 CATGAAGAACCGCATCAT---CGCCGACGGTGGTTCTATCCAGCGCATCCCCAACATCCC 117395 Query 95325 GGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || |||||| | | |||||||| || ||||| ||| ||||||| Sbjct 117394 TGATGAGATCAAGACCTTATACAAGACTGTCTGGGAAATCTCGCAGCG 117347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721109794480