Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq249 140 3e-28 seq50 118 1e-21 seq53 84.2 2e-11 >seq249 Length=183263 Score = 140 bits (154), Expect = 3e-28 Identities = 428/652 (66%), Gaps = 15/652 (2%) Strand=Plus/Plus Query 153815 CTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCC 153874 ||| ||||| || ||||||||| | ||||||||||||||| ||| || || || Sbjct 118285 CTCTCTCTCATACTTCTCGTACAGGGCAACGAACTCGTCGCCGTAGACGTCAGCAAGACC 118344 Query 153875 GGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAA 153934 || |||| | || ||||| |||| |||| | | | | ||| || ||||||| Sbjct 118345 TGGGCACTCGTTGGGGCACATAAGCGTCCACTCGCCATTCTCCTGGACACGCTGCATGAA 118404 Query 153935 CAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCAT 153994 ||||| || | ||| || || || | | |||||| || |||||| ||| Sbjct 118405 AAGATCGGGGATCCACAGGGCATAGAACAAGTCGCGAGCACGAACCTCCTCCTTGCCGTG 118464 Query 153995 GTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGC 154054 ||| ||| | ||| | || ||| ||| |||||||| || || | ||||| ||| Sbjct 118465 GTTCTTCCTCAAGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGC 118524 Query 154055 CAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGAC 154111 | ||||| ||||| || ||||| ||||||| ||| | | |||||| |||| Sbjct 118525 GAACGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGTAGAC 118584 Query 154112 GCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCG 154171 || | ||| || || ||| | | || || ||||| ||| | | ||| Sbjct 118585 ACGAAGCATAGGGATGAGACCGTTCGATGTTCCATTGGTTCCTCCGATATAGGAGCCAGT 118644 Query 154172 GGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGC 154230 ||| || | | ||||| || | ||||| ||||| || || ||| || || || ||| Sbjct 118645 GGCACGAATGCGGTGCACATTGAGACCAATACCGCCAGCAGT-CTTGGAGAT--CAACGC 118701 Query 154231 A---GTCGCCCA-GCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAG 154286 | ||| | | | ||| |||||| ||||| ||||| || || | | ||| | | Sbjct 118702 ACAAGTCTTCAATGTGTC--GTAGATACCGTCAATGCTGTCTTCCTTCATGTCGATGAGG 118759 Query 154287 AAACACGAACACATTTGCGGA-ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTG 154345 || || || ||||||| || ||| | || ||||| ||||| || || |||||| Sbjct 118760 AAGCAAGATGACATTTGTGGGGATG-GTGTGCCCGCGTTGAAGAGCGTCGGCGACGCGTG 118818 Query 154346 CGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCC 154405 || || ||||| ||| | ||| || |||||||| | || || || || Sbjct 118819 TGTGAAGTACTTTTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCAATGTCCTCCAT 118878 Query 154406 GTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACT 154457 ||| || || | ||||||||||||||||||||||| || |||||||| ||| Sbjct 118879 GTGGATACCAACAGCGACGCGCATGAGCATGTGCTGTGGGCGTTCGGCAACT 118930 >seq50 Length=575836 Score = 118 bits (130), Expect = 1e-21 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 52665 CTGCTGGGCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCT 52723 || || || |||||||| | || ||||||| ||||||||||||| || || || ||||| Sbjct 303357 CTACTCGGTATGAACGCT-ACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCT 303299 Query 52724 GTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAA 52783 | | || || || | || ||||||| |||||| ||| || || || || ||| | Sbjct 303298 GCTCCTGGCTCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGA 303239 Query 52784 CAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| ||||||| |||||||||||||| ||||||||||| || || || || Sbjct 303238 GAACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 303185 >seq53 Length=112647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | ||||| ||||| || || || |||| | Sbjct 70442 GACTCCTTCTGGATATTGTAGTCCGAAAGGGTACGACCATCCTCAAGCTGCTTGCCGGCA 70501 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| ||||| || ||||| ||||| ||| | || | || | Sbjct 70502 AAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC-TGAATCTTGCTCTTGAC 70560 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 |||| | | |||||||| ||||||||||||| || | ||| || || || Sbjct 70561 GTTGT-CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 70611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260303291360