Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq53 114 1e-20 seq50 114 1e-20 seq136 84.2 2e-11 >seq53 Length=112647 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 126911 TGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGT 126970 |||| || ||||| || || || ||||| ||| || ||||| ||| || ||||| Sbjct 70149 TGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCGAGCTGC 70208 Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| ||||||| ||||||||||| ||||| || ||||||||||| ||| || Sbjct 70209 TTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCTTGGATCTTG 70268 Query 127031 TGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||||| |||| |||| ||| || | ||||||||||| || | || |||||||| Sbjct 70269 CTCTTGACGTTG-TCGATGGTATCGGATGACTCGACTTCGAGAGTGATGGTCTTGCCGGT 70327 Query 127090 CA 127091 || Sbjct 70328 CA 70329 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | ||| ||||| || || |||||||| || | |||||| ||| || Sbjct 69686 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTGCGACCATCCTC 69745 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| |||| | |||||||| || || || ||||||||||||||| Sbjct 69746 CAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTG 69805 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| | || | ||| |||| ||| || || | ||| | || || Sbjct 69806 AATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTT 69865 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || || ||||| Sbjct 69866 GCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || || || ||||| || Sbjct 69897 CCACCACGGAGACGGAGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 69956 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || |||||| |||| | |||||||| || || || Sbjct 69957 AGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 70016 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | || | ||| |||| ||| || Sbjct 70017 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 70076 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||| || || || || || ||||| Sbjct 70077 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 >seq50 Length=575836 Score = 114 bits (126), Expect = 1e-20 Identities = 342/524 (65%), Gaps = 33/524 (6%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCAT--GAAGTACATTGAAAACGAAAACGTCA 47127 |||||| | |||| |||||||| |||||| | || | | | | | | ||| | | Sbjct 303690 CCCTGCATCCGCAAGAAGGCCGACTGGGCCCTACGATGGATCTCGGACAAGAACTCTACC 303631 Query 47128 CTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187 || ||| | ||| | | || || ||| |||||||||| |||||||| || | Sbjct 303630 TTC--GCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCGT 303573 Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247 | ||| | || || | |||| | || | |||||||| || || ||| || | Sbjct 303572 TCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTTTCTAATG 303513 Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT----------CTAC 47297 |||| || || | ||||| ||| ||||||| ||||||| ||||| || | Sbjct 303512 AGCTCATTTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGTCTGTTGTTCTCTCTGC 303453 Query 47298 TACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAA 47357 | ||||| | ||| | |||| || |||| || ||| | |||| Sbjct 303452 T-CAACA--ACCGTCCAAGCAAAGATGCT-GTGCAGGCCATCATCA---------CCGAG 303406 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||||| |||||| |||||| | |||| ||||| ||| | || | || ||| Sbjct 303405 GCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCACTACTCGGTATG 303346 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| | ||| | |||||||||| || ||||||||||| |||||| | || Sbjct 303345 AACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTGCTCCTGGCTCTT 303286 Query 47478 AAGTATCCCAAGATTTACCACACCGAGA---ATCCATTCGAGTTTATGAACAACATTTCG 47534 | |||||| ||| ||| || || | || ||||| || ||| | ||||| ||| Sbjct 303285 GGCAACCCCAAG---TACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCTCG 303229 Query 47535 CTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || | |||||||||||||| ||||||||||| || || || || Sbjct 303228 CTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 303185 >seq136 Length=202766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| ||| Sbjct 67032 CCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 66973 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| |||||||| || || || Sbjct 66972 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 66913 Query 127007 ATGCCCTCCTTGTC 127020 |||||||||||||| Sbjct 66912 ATGCCCTCCTTGTC 66899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498791009120