Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq249 132 4e-26 seq53 89.7 5e-13 >seq249 Length=183263 Score = 132 bits (146), Expect = 4e-26 Identities = 410/626 (65%), Gaps = 14/626 (2%) Strand=Plus/Minus Query 122894 GGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC-- 122951 ||||||| | |||||||| || || |||||||||||||||||| | || | ||| Sbjct 118935 GGAAAAGTT-GCCGAACGCCCACAGCACATGCTCATGCGCGTCGCTGTTGGTATCCACAT 118877 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 ||| ||||| || || || | ||| || ||||| | ||||| ||||| | ||||| Sbjct 118876 GGA--GGACATTGAGAAGGCCATCGAGACATACGACTACATGTCGCAAAAGTACTTCACA 118819 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 |||||| || || | ||| ||| ||||| | || || |||| || || || Sbjct 118818 CACGCGTCGCCGACGCTCTTCAACGCGGGCACACCATCCCCACAAATGTCATCTTGCTTC 118759 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 | || | || ||||||||||| ||||||||| || || ||| ||| ||| Sbjct 118758 CTCATCGACATGAAGGAAGACAGCATTGACGGTATCTACGACACATTGAAGACTTGTGCG 118699 Query 123132 TTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA 123191 ||||| ||||| || ||||| || || | || |||||| | | | | | || Sbjct 118698 TTGATCTCCAAGACTGCTGGCGGTATTGGTCTCAATGTGCACCGCATTCGTGCCACTGGC 118639 Query 123192 AGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC--ATGCTGCGAGTTT 123249 | ||| || | ||| | |||| | ||| ||| |||| ||||| || || | Sbjct 118638 TCCTATATCGGAGGAACCAATGGAACATCGAACGGTCTC--ATCCCTATGCTTCGTGTCT 118581 Query 123250 ACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGA 123306 |||| ||| ||| || ||||||||||||| || ||| ||| || ||| | || | Sbjct 118580 ACAACAACACCGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCGTTCGCCA 118521 Query 123307 TCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGG 123366 |||| || || || ||||||| ||| || | || || | | || | ||| | Sbjct 118520 TCTACCTCGAGCCATGGCACGCTGACGTCTTCGGCTTCCTCGACTTGAGGAAGAACCACG 118461 Query 123367 GGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTA 123426 | ||| || || ||||| ||||| || || | ||| | |||||| | || | Sbjct 118460 GCAAGGAGGAGGTTCGTGCTCGCGACTTGTTCTATGCCCTGTGGATCCCCGATCTTTTCA 118401 Query 123427 TGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-C 123485 ||| || || | || | |||| |||| |||| ||||| ||| | ||| || || | Sbjct 118400 TGCAGCGTGTCCAGGAGAATGGCGAGTGGACGCTTATGTGCCCCAACGAGTGCCCAGGTC 118341 Query 123486 TTGAGCGACGTTTACGGCAATCAGTT 123511 ||| ||||| |||||| | |||| Sbjct 118340 TTG-CTGACGTCTACGGCGACGAGTT 118316 >seq53 Length=112647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| |||||||| || || | ||| | ||| || Sbjct 70427 ACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAAAGGGTACGACCATCCTCA 70486 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| || |||||||| || ||||||||||| || || ||| Sbjct 70487 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGA 70546 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||||||||||||| || ||||| || | ||| || Sbjct 70547 ATCTTGCTCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTT 70605 Query 45311 GCCGGT 45316 |||||| Sbjct 70606 GCCGGT 70611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001290286480