Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq170 114 1e-20 seq136 113 5e-20 seq53 113 5e-20 >seq170 Length=170908 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||||||||| Sbjct 129706 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAA 129765 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||| | || | || ||||||||| |||||| ||||| Sbjct 129766 GATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGACTTGA 129821 >seq136 Length=202766 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||||||||| |||||||| | Sbjct 67020 CGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA 66961 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| |||| ||||||||||| | || | || ||||||| Sbjct 66960 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 66901 Query 46499 TC 46500 || Sbjct 66900 TC 66899 >seq53 Length=112647 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | ||||| | || |||||||||||||| ||||| Sbjct 70160 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAA 70219 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||||||||| || | || | | ||||||||| |||||| |||||| ||| Sbjct 70220 GATCAAGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCTTGGATCTTGCTCTTGA-CGT 70278 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | || ||| || || || || | |||||||| ||||| |||| Sbjct 70279 TGTCGATGGTATCGGATGACTCGACTTCGAGAGTGATGGTCTTGCCGGTCA 70329 Score = 113 bits (124), Expect = 5e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || || || | || || |||||||||||||| || Sbjct 70444 CTCCTTCTGGATATTGTAGTCCGAAAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAA 70503 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || ||||||||| ||||| |||||| ||| Sbjct 70504 GATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTGA-CGT 70562 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | |||||| || ||||| || | ||||| || ||||| || Sbjct 70563 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 70611 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || |||||| |||||||||||||| || || ||||| | Sbjct 69680 ACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTGCGACC 69739 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || || | ||||||||||| | || | || |||||| Sbjct 69740 ATCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 69799 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||||| | | | || || ||| || || || | || || Sbjct 69800 GTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAAT 69859 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || || ||||||||||| Sbjct 69860 GGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| ||||| || || |||| || |||||||| || ||||| Sbjct 69933 TCCTTCTGGATGTTGTAGTCTGATAGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAG 69992 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | || |||||||||| ||||| ||||| | Sbjct 69993 ATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 70052 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || ||| || || || | || ||||| ||||| ||||| || || || Sbjct 70053 TCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACG 70112 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 70113 AAGATTTGCAT 70123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236011867760