Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq50 172 5e-38 seq136 104 2e-17 seq53 102 8e-17 seq170 95.1 1e-14 >seq50 Length=575836 Score = 172 bits (190), Expect = 5e-38 Identities = 204/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| ||| || || | || | ||| ||||| ||||| ||| || || Sbjct 303790 GTATGTGTCGATCAGGAGAGAGTATGTCTCGGCGTGGACGTTTTCCATCATGATCTGGAA 303849 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || || ||| | || || || || ||| |||||||| ||||| Sbjct 303850 ACCGTAGAAGCATCGAGCTTCGGGAATTTGTACCTCACCAGAGAACCGCTCGACGAGATT 303909 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| ||| ||| ||||| || || || ||||| |||||| ||| Sbjct 303910 CTCGTTGACGATGCCATCGGAGGCTGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCG 303969 Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||||| | |||| | ||||||| || ||||||||| || || | |||||| Sbjct 303970 CTCGTCGTCGTTGAGGCGCTTGTTCCAGTCGTGCAGGTCCTTGGAGAGATCGATCTCCTC 304029 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || ||||| || || |||||||| Sbjct 304030 GGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACAT 304065 Score = 129 bits (142), Expect = 6e-25 Identities = 322/481 (67%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 303200 TTCTCGAAGAAGTTGGTCTTGCCGGCAAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 303259 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||||| ||||| | | || | | |||||| | |||||| ||||||||| Sbjct 303260 GTCGCGTTGTAGTACTTGGGGTTGCCAAGAGCCAGGAGCAGACGGTCGGCGACGAACTCG 303319 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | | || || | || || || |||| || || || |||| Sbjct 303320 ATGTACTGGCACATGAGAGTAGCG-TTCATACCGAGTAGTGCGCAGGGG-AGAGCATCGG 303377 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 || || ||||| || |||| || ||||||| ||| || || | || Sbjct 303378 ACAGGAACTCCTGCTCAATCTCGACGGCCTCGGTGATGATGGCCTGCACAGCATCTTTGC 303437 Query 132863 TCGGCCG-TTGC--ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | || || ||| | || | ||||| || ||||||||||| |||| ||||| Sbjct 303438 TTGGACGGTTGTTGAGCAGAGA---GAACAACAGACAAGCAAAGTCTGTGTGCATGCCCT 303494 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | |||||||| || || || || | |||||||| || || || || || | Sbjct 303495 CGTCACGAGAAATGAGCTCATTAGAAAAGGTAAGACCGGGCATCAGACCACGCTTCTTCA 303554 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| ||||| || ||||||| |||||||||||| || || || | Sbjct 303555 GCCAGAAGATGGACGCGAACGATCCACTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAA 303614 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 | || || | | |||| || | | ||| | |||||| || || ||||| ||||||| Sbjct 303615 CGAGACGGTTGGCGAAGGTAGAGTTCTTGTCCGAGATCCATCGTAGGGCCCAGTCGGCCT 303674 Query 133100 T 133100 | Sbjct 303675 T 303675 >seq136 Length=202766 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| || || | ||| ||||| ||||| || Sbjct 66899 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAG 66958 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || ||||||||||||||| ||||| ||||||| || |||||||| Sbjct 66959 GATGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 67018 Query 38457 CG 38458 || Sbjct 67019 CG 67020 >seq53 Length=112647 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||| ||| | || || ||| | | Sbjct 70123 ATGCAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCG 70064 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| || || | ||||| Sbjct 70063 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 70004 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || |||||||| |||| || || || ||||||||| Sbjct 70003 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACGCTATCAGACTACAAC 69944 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || ||||| || ||| Sbjct 69943 ATCCAGAAGGAATCTACTCTCCACTTGGTACTCCGT 69908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| | |||| | | | | |||| | |||| Sbjct 70327 ACCGGCAAGACCATCACTCTCGAAGTCGAGTCATCCGATACCATCGACAACG--TCAAGA 70270 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| || || | || || ||||| | || | ||| |||| Sbjct 70269 GCAAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAGCAGCGCTTGATCTTCGCTGGCA 70210 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | |||||| | ||||||||||||||| ||||| Sbjct 70209 AGCAGCTCGAAGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGA 70161 >seq170 Length=170908 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || |||||| | ||||| ||||| | || | ||| ||||| Sbjct 129813 AAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 129754 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| |||||||| ||||||||||||||| ||||| |||| || || Sbjct 129753 CAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 129694 Query 38448 TTGGTGCTGCGT 38459 |||| || ||| Sbjct 129693 CTGGTCCTTCGT 129682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170686769920