Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq219 131 1e-25 >seq219 Length=188997 Score = 131 bits (144), Expect = 1e-25 Identities = 435/678 (64%), Gaps = 48/678 (7%) Strand=Plus/Plus Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810 ||| ||| ||||||| |||||| | ||||||| ||| | || ||| | | || Sbjct 115313 GTTGATCTTCAGTGTAGGAAAGTCGCGTGGCTCCCGCTCTACTTGCACCTTGACTGCGTC 115372 Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 |||||||| ||| || || ||||| |||| ||| || ||| ||||||| || Sbjct 115373 GACGTGATCGCAGTACACATGTGCGTCGCCCATGGTATGTGTAAAGGTTCCCGGTGTGAG 115432 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 || ||| || |||| ||||| ||| || |||| ||| |||||||||||||| || Sbjct 115433 ATCGCAGACATGCGCCAGCATGTGCGTTAGCAGAGCGTATGATGCGATGTTAAAGGGCAC 115492 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA-----CACGAGAGCTCTCCG--- 29982 ||||| ||||| || | || | |||||| || | || | | | ||| | Sbjct 115493 GCCGAGTCCCATATCGCAAGAGCGCTGGTACAGTAGCGAATGCAGCACACCCCTCGGCCT 115552 Query 29983 -------TCGCTC---------------------ACGTAAAACTG---ACACATGGTGTG 30011 |||| | ||||| ||||| | |||| || Sbjct 115553 TTCTGTCTCGCCCTCCTTCTGCCTGGGGAACGAAACGTAGAACTGTGCAAACATA---TG 115609 Query 30012 GCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCG 30071 || |||||||||||||| | ||| || |||||||| |||| || ||||| | Sbjct 115610 ACAAGGAGGAAGAGCCATCTTCCTCAAATCCGCCGGGTTCCATGCGCTCAGAATGATTCT 115669 Query 30072 CCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCAT 30131 | || | || ||| | | || | | | | || ||| ||||| || Sbjct 115670 TCGATCGTACGGTCGATTCTTCAACTTATCGATAACCTCTGCCAACTGGTCCACGCCTTG 115729 Query 30132 CCCCGAGTAGTCTGCCCTCATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACC 30190 ||| | ||||||||| || || || | ||| ||||| |||||||||| ||| ||||| | Sbjct 115730 CCCTGTGTAGTCTGCA-TCGTGCCCCTTGTATTCTGCACCGAAATGCCGCCATTGGAAGC 115788 Query 30191 CGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGT 30250 ||||||| || || |||||||||||||| ||| ||||| |||| | || Sbjct 115789 CGTACACAGGCCCAAGGTCTCCCTCTTCGTGGTGTGACAAGCCGACGCTGTCGAGGTAGG 115848 Query 30251 CTCTGGAACCGTTGGCGTCCCAGATCTT--TACCCCCTTCTCGGAGAGCTCTTTGGAGTT 30308 | ||||||||| ||||||||||||| | || ||||| | || | ||| ||| Sbjct 115849 TGCGCGAACCGTTGCCGTCCCAGATCTTGATGCCAGCTTCTTGCAGGG--ACTTGTAGTG 115906 Query 30309 TGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTT 30368 |||||| || |||||||| || || || | | ||||| | ||| || | || Sbjct 115907 TGTGGAGCCAGCAACGAACCAGAGAAGTTCGCCGATTACGGCGCGCAGAAACACGCGTTT 115966 Query 30369 GGTCGTGAGGAGGGGAAA 30386 ||||||||||||||| || Sbjct 115967 GGTCGTGAGGAGGGGTAA 115984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615916750874