Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq249 226 5e-54 seq50 145 1e-29 >seq249 Length=183263 Score = 226 bits (250), Expect = 5e-54 Identities = 536/795 (67%), Gaps = 35/795 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||| Sbjct 117791 GTCAAGGCAGCGTGGTAGATGGTCTCGAAGATCTGGGTGTTGAGCTTCTTGGCCTCGGGA 117850 Query 221477 GAAGTGAAGGGCATACG--CAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 || ||| |||| ||| |||| ||||| | ||||| || || ||||| || | || Sbjct 117851 GACTCGAAAGGCAAACGAAGAGCA-AGGAAAG-CATCGGCAAGACCTTGTACACCCAGAC 117908 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||| |||||||| | |||| | |||| || || || || || ||||| Sbjct 117909 CGATAGGCCTGTGACGGAAGTTGCTA-CGGCGTGCCTCCTCGACAGGGTAGTGATTGACC 117967 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||||||||| | || ||| | || |||||| |||||| Sbjct 117968 TCAATGATCTTGTTGAGGTTGCGGGTACAGACCTGCACGACCTCGTGGAGCTTC------ 118021 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 ||||| | ||| | || ||| | || || || ||||| | || |||||| Sbjct 118022 TTGAAGTCGAACACACC-CCG-CTTGTAG----TCAACAAACGATGGCAGAGCAACGGAA 118075 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGA 221771 |||| ||| || ||||| ||||| || || | || || | |||||||| || || | Sbjct 118076 GCCAAGTTGCAAACGGCAACCTCATC--TGGCGCTGTGTATTCGATGATCTCAGTGCACA 118133 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || ||||| || |||| || || || ||| | ||||| || |||| Sbjct 118134 GGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTCCTGTTGGCGGCATCCT 118193 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| ||||| ||||| ||||||||| ||||||| | || || | |||||| | Sbjct 118194 TGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATGGCATACCAGAGCT 118253 Query 221892 CTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATAC--CCGGTATA 221946 | ||| | || || ||| | ||||| ||| | |||||| | ||| | Sbjct 118254 TTTGGGCACGGACGGT-CTCGCG-----ACCCTTATTCTCTCTCTCATACTTCTCGTACA 118307 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 | ||| | |||| || ||||| | || | || ||||| ||| | ||| ||||| Sbjct 118308 GGGCA--ACGAACTCGTCGCCGTAGACGTCAGCAAGACCTGGGCACTCGTTGGGGCACAT 118365 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || |||| | || || | ||| | ||||||||| || || ||||||||||| || Sbjct 118366 AAGCGTCCACTCGCCATTCTCCTGGACACGCTGCATGAAAAGATCGGGGATCCACAGGGC 118425 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || | || | | || ||||||| ||||| ||| ||||||| || | || Sbjct 118426 ATAGAACAAGTCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCAAGTCGAGGAA 118485 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 | || | |||||||||||| ||||| || |||| ||| | || || || |||||||| Sbjct 118486 GCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAACGCACCAGGGCGCTTGTT 118545 Query 222187 GCCACCCTGATCCAC 222201 ||||||||| || || Sbjct 118546 GCCACCCTGGTCGAC 118560 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 221072 TCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAA 221131 || ||||| |||||| | || | || |||||| || ||| || || ||||| Sbjct 117455 TCGGTCCAAAGACCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTGACAACCTGGAAC 117514 Query 221132 TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTG 221191 || || | |||||| | | ||| | ||| || ||| | || |||| || ||||||| Sbjct 117515 TCACCAGCGAGCACACGACGAGAGTAGATGTTTGATGTGTATGGCTCGAAGCACTCGTTG 117574 Query 221192 TTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250 ||||| |||||||| | ||| ||| |||||||| ||||| || |||||| |||||| Sbjct 117575 TTGCCGAGGATCTGGGAAGTGGAGGCAGTGGGCATAGGTGCAACGAGCAGAGAGTTGCG 117633 >seq50 Length=575836 Score = 145 bits (160), Expect = 1e-29 Identities = 312/469 (67%), Gaps = 15/469 (3%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | |||| || | | | || || || |||||||| || || ||||||||||| |||| Sbjct 303641 AGAACTCTACCTTCGCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCA 303582 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 | || ||||| ||| ||||||||||||| ||| || || |||||||| || || Sbjct 303581 GTGGATCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCT 303522 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 |||| || |||||||| | |||||||| | |||| ||| ||||| || ||| | | Sbjct 303521 TTTCTAATGAGCTCATTTCTCGTGACGAGGGCATGCACACAGACTTTGCTTGTCTGTTGT 303462 Query 26039 ACACGGGCCACTTGCTCCACAAACCTTCTCAAG---AGACCGTCTACAG--TATCATCAA 26093 | | ||||| || |||| || |||| ||| | | ||| ||||||| Sbjct 303461 TCTC------TCTGCTCAAC-AACCGTC-CAAGCAAAGATGCTGTGCAGGCCATCATCAC 303410 Query 26094 AGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGG 26153 ||||| || ||||| ||| ||||||| | | || Sbjct 303409 CGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCACTACTCGG 303350 Query 26154 CATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCC 26212 |||||| | |||||| |||| ||||| |||| || ||||||| |||||| || | Sbjct 303349 TATGAACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTGCTCCTGGC 303290 Query 26213 AGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATAT 26272 || || | ||| ||||| || | ||||| |||||||| ||||| ||||| | Sbjct 303289 -TCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAGAACATCT 303231 Query 26273 CGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || | | || |||||||||||||| || ||| | || || || || || Sbjct 303230 CGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCA 303182 Score = 105 bits (116), Expect = 1e-17 Identities = 179/256 (70%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | ||||||||||||||| | || |||||||||||| ||||| ||||| || Sbjct 304071 TGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTCTCC 304012 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596 |||||| || ||| |||| || | ||| ||||| ||| || ||| | || Sbjct 304011 AAGGACCTGCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCCCAC 303952 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| |||||||| ||||| || || ||||||||||| |||| | ||| Sbjct 303951 GTCCTCGCTTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAATCTCGTCGAGCGGTTC 303892 Query 25657 ACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || || | | | | | || | | || ||||||||||||||||| || || Sbjct 303891 TCTGGTGAGGTACAAATTCCCGAAGCTCGA-TGCTTCTACGGTTTCCAGATCATGATGGA 303833 Query 25716 AAATGTGCACTCTGAG 25731 ||| || ||| | ||| Sbjct 303832 AAACGTCCACGCCGAG 303817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840875630720