Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq245 125 2e-23 seq50 102 2e-16 >seq245 Length=219766 Score = 125 bits (138), Expect = 2e-23 Identities = 212/302 (70%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGC-GTCATATAGCCG 251465 || |||||||| | | || || || || |||| ||||| || | || | |||| || Sbjct 182594 ATCAGACCACAGATGTCGCAGACGTGAACCGTGTACGCATCCGAGACTGTGA-ATAGACG 182652 Query 251466 ACCCTTG-GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGA 251524 ||||| | |||| || ||||| || | ||||||||||||||||||||||| |||| Sbjct 182653 CTCCTTGAGAAAAGC-AGCAGCACCATGAGCGATCATACAATCACGCTCCATTTCTCCGA 182711 Query 251525 AACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAG 251584 |||| ||||||||||| | ||| | ||| ||| ||||||| ||||| ||| | | | Sbjct 182712 AACGCAGACCACCATCCCTAGCACGACCTTCGACAGGCTGGCGAGTCAGAATCTGGAGGG 182771 Query 251585 GACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATG 251644 |||| || || || ||| || | ||||||||| | || ||||||||| | | Sbjct 182772 GACCACGGGCACGCGCGTGGATCTTGTCGTCGACCATATGCCTCAGGCGCTGGTAGTAGG 182831 Query 251645 CGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 |||||| | |||||| | |||| | || ||||| | |||| ||||| | || Sbjct 182832 TGGGACCCAAGAAGATCTGTGTGCGCATCTTCTTGCCAGTGTGTCCGTTGTACATGATTT 182891 Query 251705 CG 251706 || Sbjct 182892 CG 182893 >seq50 Length=575836 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 ||||| | |||||||| | ||||||| ||||||| | | || || | ||| Sbjct 303678 AAGAAGGCCGACTGGGCCCTACGATGGATCTCGGACAAGAACTCTACCTTCGCCAACCGT 303619 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 |||||||| ||||| | || |||||||| || |||||||| ||||| || || || Sbjct 303618 CTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCGTTCGCGTCCATCTTC 303559 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || ||||||||| | | || || || |||||||| || || ||||| | Sbjct 303558 TGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTTACCTTTTCTAATGAGCTCATTTCTCGT 303499 Query 133631 GACGAGGCACTTCACACCGAATTTGC 133656 ||||||| | ||||| || ||||| Sbjct 303498 GACGAGGGCATGCACACAGACTTTGC 303473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811226109906