Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq50 149 8e-30 seq254 145 9e-29 seq249 136 5e-26 seq260 118 1e-20 seq79 105 8e-17 seq332 95.1 1e-13 seq5 95.1 1e-13 seq107 91.5 2e-12 seq153 89.7 6e-12 seq30 89.7 6e-12 >seq50 Length=575836 Score = 149 bits (164), Expect = 8e-30 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | |||||||| Sbjct 303176 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGGCAAGCGAGATG 303235 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| || ||||||| ||| | || || | | | Sbjct 303236 TTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTGGGGTTGCCAAGAGCCAGG 303295 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 303296 AGCAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGAGTAGCGTTCATACCGAGT 303355 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||| || ||||| | ||| ||||||||||||||| |||| Sbjct 303356 AGTGCGCAGGGGAGAGCATCGGACAGGAACTCCTGCTCAATCTCGACGGCCTCGGTGATG 303415 Query 868931 AT 868932 || Sbjct 303416 AT 303417 Score = 107 bits (118), Expect = 2e-17 Identities = 177/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| ||| || || ||||||||| ||||| ||| | | || | | ||| || Sbjct 303823 GTGGACGTTTTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCTTCGGGAATTTGTAC 303882 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| |||||| || | || |||||| |||||||| ||| ||| ||||| || Sbjct 303883 CTCACCAGAGAACCGCTCGACGAGATTCTCGTTGACGATGCCATCGGAGGCTGCGAAGAA 303942 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC---CCAGTGGAC 869811 ||| |||||||| ||| ||| ||||||||||||| |||| | ||||| | Sbjct 303943 AGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGAGGCGCTTGTTCCAGTCGTG 304002 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||| || | ||||||||||||||||| || ||||| ||||| ||||| Sbjct 304003 CAGGTCCTTGGAGAGATCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTA 304062 Query 869872 CATCTCCCATACTTG 869886 ||| | ||| || || Sbjct 304063 CATTTGCCAGACCTG 304077 Score = 89.7 bits (98), Expect = 6e-12 Identities = 122/166 (73%), Gaps = 11/166 (7%) Strand=Plus/Plus Query 869209 AAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGC 869267 ||||| || |||||||| || || |||||||| ||||| ||||||| ||| ||| | Sbjct 303520 AAAGGTAAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGACGC-GAACGATC 303578 Query 869268 CCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327 | ||| |||||||||||||||||||||||| | | ||| || | ||| ||| || || Sbjct 303579 CACTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGACGGTTGGCGAAG--GTAGA 303636 Query 869328 GGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 | | ||||| |||||| | |||||||||||||| || Sbjct 303637 G----TTCTTGTCCGAGATCCATCGTAGGGCCCAGTCGGCCTTCTT 303678 >seq254 Length=315905 Score = 145 bits (160), Expect = 9e-29 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| |||||||||| | || |||||| | || |||||| Sbjct 26597 GCTGCCAACTACCTCGACATCAAGGCTCTGCTCGACGTCGGCTGCAAGACGGTCGCCAAC 26656 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||||||||||| ||||||||||||||||| |||||| || ||| Sbjct 26657 ATGATCAAGGGTAAGTCGCCCGACGAGATCCGCAAGACCTTCAACATCCAGAACG 26711 >seq249 Length=183263 Score = 136 bits (150), Expect = 5e-26 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| |||| || ||||| || | ||| ||||| || Sbjct 118552 CTGGTCGACGTAGCGGGCGGTGTTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGA 118611 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || | | |||| ||| | ||| || | |||| | | || Sbjct 118612 TGTTCCATTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGCACATTGAGACC 118671 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | ||| || || | ||||||||||| || || Sbjct 118672 AATACCGCCAGCAGTCTTGGAGATCAACGCACAAGTCTTCAATGTGTCGTAGATACCGTC 118731 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| | ||| ||||| || || |||| ||| | ||||| Sbjct 118732 AATGCTGTCTTCCTTCATGTCGATGAGGAAGCAAGATGACATTTGTGGGGATGGTGTGCC 118791 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||||| |||| ||| ||||| ||| |||||||| |||||| || Sbjct 118792 CGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTATGT 118851 Score = 93.3 bits (102), Expect = 5e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 1628166 GACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGG 1628224 || |||||| ||||||||||||| | || | ||||| ||||||| ||||||| | Sbjct 118117 GATGATCTCAGTGCACAGGTTGGAGCTGCG-AATGGTACCGAGGTTCTTCTGGTTGCTCT 118175 Query 1628225 TCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGA 1628284 || |||| |||| ||||||| |||||| |||| ||| |||||| |||| ||| ||| Sbjct 118176 TCCTGTTGGCGGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGA 118235 Query 1628285 CGATGGCCGACCAGATCT 1628302 |||||| |||||| || Sbjct 118236 GGATGGCATACCAGAGCT 118253 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||| || || || | |||||| || || ||||||||||||||||||||| | | Sbjct 118416 TCCACAGGGCATAGAACAAGTCGCGAGCACGAACCTCCTCCTTGCCGTGGTTCTTCCTCA 118475 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||||| || ||| | ||| |||||||| ||||| |||||| ||| || || || Sbjct 118476 AGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAACGCACCAG 118535 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 118536 GGCGCTTGTTGCCACC 118551 >seq260 Length=180738 Score = 118 bits (130), Expect = 1e-20 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 ||||||||||| |||||||| ||||| ||||| ||| ||| || | || | ||| Sbjct 57560 GAGGACAGCATTGGCGGCACAGTGACATGCGTCATTCGAAACTGCCCCACTGGGTTGGGC 57501 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 |||||||||||||||||| | ||||| ||| || ||||| ||||| || ||||| || Sbjct 57500 GAGCCGTGCTTTGACAAGTTGGAGGCAAAGCTTGCGCACGCTATGCTTTCCATCCCAGCG 57441 Query 19164 ACCAAGGGATTCGAGATTGG 19183 |||||||| || |||||||| Sbjct 57440 ACCAAGGGCTTTGAGATTGG 57421 Score = 114 bits (126), Expect = 2e-19 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 18090 CACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGC-GTGCCGC 18148 ||||| || ||||||||| ||| | | ||||| ||||||||| ||| || || | Sbjct 58240 CACCAGCTATGGCGAGTCCCACTGCCTCAGTGTCGGTGCCATCATCGATGGCTGTCCCCC 58181 Query 18149 CGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCC 18208 || ||||| | || |||| |||||||||||||| ||| || || || ||||| |||| Sbjct 58180 CG-GCATGGCTCTCACCGAAGCCGACATCCAGCCCCAGATGACACGACGACGACCCGGCC 58122 Query 18209 AGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGG 18268 || |||| | | || ||||| |||||| || ||| |||||||| || || | Sbjct 58121 AGTCCGCAATCACGACTCCGCGAAACGAGAAGGACAAGGTCGAGATCCAGTCTGGAACCG 58062 Query 18269 AGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTC 18303 || |||||||||||| ||| | ||| ||||| || Sbjct 58061 AGTTCGGCCTCACGCTGGGCACACCCATCGGCATC 58027 >seq79 Length=437079 Score = 105 bits (116), Expect = 8e-17 Identities = 152/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||| ||| ||| || ||||||||||||||||| || || || || || | Sbjct 110622 CGATCTTCGAGTCGGGGTCTGAGGCGCTCATCTTGCCGCCCTGC---AGACCAGGGACCA 110566 Query 1852104 GCGGGTTGA-GCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCA 1852162 ||||| | |||| ||| ||||| | ||||||| || ||| ||| || Sbjct 110565 TGGGGTTCATGCAG-TGGGCGCGCTCCTTGTAGCCGATCTTGGGGAGGATGTCCTTTGCG 110507 Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 | || || |||||||||||||| ||||| || || |||||||||||||| |||| Sbjct 110506 AGCGCGAAGATCTTGCGCTGGTCAACACCGCCGAATTGCATGTCGACGTCGAGGTACTGC 110447 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCA 1852253 |||||||| || ||||| ||||| ||||||| Sbjct 110446 TCGTCGAGAGCTTGCATAAGCGGATAGAGCA 110416 >seq332 Length=41391 Score = 95.1 bits (104), Expect = 1e-13 Identities = 278/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 || |||||||||||||||||||| |||| | | ||| | || || | ||| |||||| Sbjct 23639 CCATCGGTGCCGTTCTTGAAGCCAATGGGGAAGGACAGACCAGAGGCAAGCTCACGGTGC 23580 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATAA 1726852 | ||| ||| || |||||||| || | |||||| | | |||||| || | | | Sbjct 23579 AACTGCGACTCTGTTGTGCGCGCACCGATGGCGCCGAGGGAAATCAGGTCGGCGAGAAAC 23520 Query 1726853 -GGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAG 1726911 |||| | | | | ||| | |||| ||| | |||| || | ||| | ||| Sbjct 23519 TGGGGGGAGATGGTGTC-GAGCATCTCGGAGGCAATGGGC--ATGCCAGCCGAAGT-GAG 23464 Query 1726912 ATCGCGCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAG 1726971 ||| || || ||| || ||| || | | | || ||||| |||||| Sbjct 23463 GTCGACGAAGAGCTTGCGAGAGATGCGCAGACCCTTGTTGATCTGGAACGACTCGTCGAT 23404 Query 1726972 GTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGC 1727031 |||||||||| || |||||||||||| || || || ||||| ||||| |||| ||||| Sbjct 23403 GTCGGGGTCGTTGATCAGGCCCTTCCAGCCTACAGTTGTGCGGGGCTTCTCGAGGTAGGC 23344 Query 1727032 GCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCAGGCGTCG 1727091 ||||||| | ||| | ||| || || ||| | | | ||| ||||| | Sbjct 23343 ACGCATGATGATGCAGATGTTGTCCTGGAGCTTGTC---GGCGAGGGCCTTGAGGCGCTG 23287 Query 1727092 GCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCAGCAG 1727151 || || |||| | | | | ||||||||| ||| || || || || || ||||| || Sbjct 23286 GCAGTACTCGAGGGCCAGCTCGGGGTCGTGCAGCGAGCAGGGCCCGACCATGACCAGGAG 23227 Query 1727152 CCG 1727154 || Sbjct 23226 GCG 23224 >seq5 Length=465174 Score = 95.1 bits (104), Expect = 1e-13 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 1726964 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 1727023 |||||||||| ||||||| || ||||||||||||||||| || ||||||||||||||| Sbjct 315869 CCGTCGAGGTGGGGGTCGTTGAGCAGGCCCTTCCACCCGAGTGTGGTGCGCGGCTTTTCG 315810 Query 1727024 ACATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGC 1727083 | ||| |||||||||| | | || |||| ||| | ||| | | |||| | Sbjct 315809 AAGTAGACGCGCATGACGATGTGCAGATCGTC-CCG--CAGTTCTTCGGCCTTGGCGGCC 315753 Query 1727084 AGGCGTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAAC 1727139 | || ||| | ||||| | | || |||| |||||| | || |||||||| || Sbjct 315752 AACCGGCGGGCGTAGTCCATCGCCGCTTCCGGATCGTGCACAGAGCACGGACCGAC 315697 >seq107 Length=432163 Score = 91.5 bits (100), Expect = 2e-12 Identities = 219/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 1573911 GGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAG 1573970 |||||||||||| |||| ||||| ||||| | |||||| ||| | | || Sbjct 331529 GGCAAGACCACGTCCATCCTCTGTCTCGCGCGACAGTTGCTGGGCGACGCCTACAAGGAA 331588 Query 1573971 GCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATC 1574030 |||||| | || |||||||| || || ||||| || ||||||| ||||| || || Sbjct 331589 GCCGTGTTGGAGCTCAACGCCTCAGATGAGCGTGGTATCGACGTTGTGCGGAACCGGATA 331648 Query 1574031 AAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGCCACAAGGTGATCATCCT 1574089 ||| || |||| | | ||| ||||| || || | || ||| | ||||||| Sbjct 331649 AAGGGTTTTGCGCAGAAGAAGGT-GACGCTGCCACCAGGCAGGCAGAAGCTCGTCATCCT 331707 Query 1574090 CGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAA 1574149 |||||| || ||| || | || | || || ||||| ||| | |||||||||| Sbjct 331708 CGACGAAGCAGACAGCATGACAAGCGGAGCGCAACAGGCGCTGAGAAGAACCATGGAAAT 331767 Query 1574150 GCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGC 1574209 ||| | || || || || || | || |||||| ||| | |||||||| | Sbjct 331768 CTACAGCGCTACAACACGATTCGCATTCGCATGCAACCAATCGAACAAAATCATCGAGCC 331827 Query 1574210 CCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 |||||| | |||||||| ||||||| Sbjct 331828 ACTCCAATCGAGGTGCGCCATCCTGCGCT 331856 >seq153 Length=141254 Score = 89.7 bits (98), Expect = 6e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 ||||||||||||||| | | ||| || |||||| || || || | ||| Sbjct 130037 GGTCTGGATCTCGCGGGAGGAGATGGTCGACTTCTTGTTGTAGGCAGCGAGCTTGGAGGC 130096 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||||| ||| ||| |||| ||||||||||| |||||||||| | ||||| | Sbjct 130097 CTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGAATGGACATGGCGCG 130156 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||| ||||| ||||||||||| || Sbjct 130157 GTTGGAGATACCAGTGTCAGGGTGGACCTGCTTGAGGAC 130195 >seq30 Length=27937 Score = 89.7 bits (98), Expect = 6e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 507733 CACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGAC 507792 |||||||||||||||||| ||||| |||||||||||| |||| | |||||| |||| Sbjct 9994 CACCTACAACGCCGACTTCGACGGTGACGAGATGAACATGCATTTTCCCCAGAACGAGCT 9935 Query 507793 GGCGCGCGCCGAGG 507806 |||||||||||||| Sbjct 9934 GGCGCGCGCCGAGG 9921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107111462137146