Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq50 143 4e-28 seq254 127 3e-23 seq249 118 2e-20 seq79 118 2e-20 seq5 105 1e-16 seq153 96.9 5e-14 seq13 89.7 8e-12 >seq50 Length=575836 Score = 143 bits (158), Expect = 4e-28 Identities = 184/252 (73%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| | | Sbjct 303168 TGACACCGGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGGCAA 303227 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 ||||||| |||||| | ||| ||||||| || ||||| ||| | || | Sbjct 303228 GCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGCGTTGTAGTACTTGGGGTTGCCAA 303287 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| |||||||||||||| || ||||||||||||||||| | ||||||| Sbjct 303288 GAGCCAGGAGCAGACGGTCGGCGACGAACTCGATGTACTGGCACATGAGAGTAGCGTTCA 303347 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGGC 794128 | |||| || || ||| || | ||| |||| ||||| | ||| ||||||||||| Sbjct 303348 TACCGAGTAGTGCGCAGGGGAGAGCATCG--GACAGGAACTCCTGCTCAATCTCGACGGC 303405 Query 794129 CTCGATGATGAT 794140 |||| ||||||| Sbjct 303406 CTCGGTGATGAT 303417 Score = 104 bits (114), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || ||||| | ||| ||||| ||| || || | || ||||| |||||||| Sbjct 303866 GCTTCGGGAATTTGTACCTCACCAGAGAACCGCTCGACGAGATTCTCGTTGACGATGCCA 303925 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||| ||||| || ||||||||||| ||| ||| |||||||||||| |||| Sbjct 303926 TCGGAGGCTGCGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGAGG 303985 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||| | | ||| | ||| |||| ||||||||||||||| ||||| Sbjct 303986 CGCTTGTTCCAGTCGTGCAGGTCCTTGGAGAGATCGATCTCCTCGGCGGTCCAGAAGGAA 304045 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||| ||||| |||||||| | ||| Sbjct 304046 GCCTCAGCCTTCTTGTACATTTGCCA 304071 >seq254 Length=315905 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||||||||||||| | || ||||| | || |||||||| || |||||| Sbjct 26597 GCTGCCAACTACCTCGACATCAAGGCTCTGCTCGACGTCGGCTGCAAGACGGTCGCCAAC 26656 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||| ||||||||||| || |||||||||||||| |||||| || ||| Sbjct 26657 ATGATCAAGGGTAAGTCGCCCGACGAGATCCGCAAGACCTTCAACATCCAGAACG 26711 >seq249 Length=183263 Score = 118 bits (130), Expect = 2e-20 Identities = 206/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| |||| || ||||| || | || ||||| || Sbjct 118552 CTGGTCGACGTAGCGGGCGGTGTTGTTGTAGACACGAAGCATAGGGATGAGACCGTTCGA 118611 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 || ||||| || | | |||| ||| | ||| || | |||| | | || Sbjct 118612 TGTTCCATTGGTTCCTCCGATATAGGAGCCAGTGGCACGAATGCGGTGCACATTGAGACC 118671 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | ||| || | |||| || |||||||| || || Sbjct 118672 AATACCGCCAGCAGTCTTGGAGATCAACGCACAAGTCTTCAATGTGTCGTAGATACCGTC 118731 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| || || |||| ||| | ||||| Sbjct 118732 AATGCTGTCTTCCTTCATGTCGATGAGGAAGCAAGATGACATTTGTGGGGATGGTGTGCC 118791 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||||||||| |||| ||| ||| | ||| ||| |||||| ||||| || Sbjct 118792 CGCGTTGAAGAGCGTCGGCGACGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTATGT 118851 Score = 116 bits (128), Expect = 6e-20 Identities = 291/444 (66%), Gaps = 18/444 (4%) Strand=Plus/Plus Query 2071578 GACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTG 2071635 || || ||| ||||||||||||| | || |||| || ||||||| ||||||||| Sbjct 118117 GATGATCTCAGTGCACAGGTTGGAG--CTGCGAATGGTACCGAGGTTCTTCTGGTTGCTC 118174 Query 2071636 GTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTG 2071695 || |||| |||| ||||||| |||||| |||| || |||||| |||| ||| | Sbjct 118175 TTCCTGTTGGCGGCATCCTTGTAAAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCG 118234 Query 2071696 ACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCC----CTNNNN 2071751 | |||||| |||| | || |||||| || | |||||| | || Sbjct 118235 AGGATGGCATACCAGA----GCTTTTGGGCACGGACGGTCTCGCGACCCTTATTCTCTCT 118290 Query 2071752 NNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGC 2071811 | ||||| | || || |||||| | || || || || Sbjct 118291 CTCATACTTCTCGTACAGGGCAACGAACTCGTCGCCGTAGACGTCAGCAAGACCTGGGCA 118350 Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC---ACGCGGCGCATAAACAG 2071868 |||| ||||| | |||| ||| ||||| | || || || || |||| || || Sbjct 118351 CTCGTTGGGGCACATAAGCGTCCACTCGCC---ATTCTCCTGGACACGCTGCATGAAAAG 118407 Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928 ||| |||||||| | || || | ||||| || || |||||||||||||||||| Sbjct 118408 ATCGGGGATCCACAGGGCATAGAACAAGTCGCGAGCACGAACCTCCTCCTTGCCGTGGTT 118467 Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 2071988 ||| ||| |||||| || ||| || ||| |||||||| ||||| |||||| ||| || Sbjct 118468 CTTCCTCAAGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAA 118527 Query 2071989 GGCGCCCTTGCGCTTGCCGCCGCC 2072012 || || ||||||| ||| || Sbjct 118528 CGCACCAGGGCGCTTGTTGCCACC 118551 >seq79 Length=437079 Score = 118 bits (130), Expect = 2e-20 Identities = 369/560 (66%), Gaps = 16/560 (3%) Strand=Plus/Minus Query 2411379 GTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAG 2411435 ||||||| || ||||| ||| ||| || |||||||||||||||| ||| || Sbjct 110633 GTCGAGAACGTCGATCTTCGAGTCGGGGTCTGAGGCGCTCATCTTGCCGCCCTGC---AG 110577 Query 2411436 GCCCGGCACCAGCGGGTTGA-GCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGT 2411494 || || |||| ||||| | |||| ||| ||||| |||||| | | || ||| Sbjct 110576 ACCAGGGACCATGGGGTTCATGCAG-TGGGCGCGCTCCTTGTAGCCGATCTTGGGGAGGA 110518 Query 2411495 GGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGT 2411554 ||| || | || ||||||||||||||||| ||||| || || |||||||| Sbjct 110517 TGTCCTTTGCGAGCGCGAAGATCTTGCGCTGGTCAACACCGCCGAATTGCATGTCGACGT 110458 Query 2411555 CGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGT 2411614 |||||| |||||||||||| || ||||| ||||| |||| ||| | ||| || | || Sbjct 110457 CGAGGTACTGCTCGTCGAGAGCTTGCATAAGCGGATAGAGCAGGCCGGAGAGAGGGGCGT 110398 Query 2411615 T-GCGGTCCATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACGC 2411671 | | || | |||||| || | |||| | || | |||||| ||||| ||| | Sbjct 110397 TCTCAGT-CTGCTTGACGACTTCGGCGCCCGCTTTCTTTGCGTCGTGC--TCGGAAGTGA 110341 Query 2411672 GCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGC 2411731 | | ||| |||| || || | | ||||| | | | ||| ||| | ||| Sbjct 110340 TAGAGGCCAGACGCAGGACATCCATCATGTAGTCTGGCTTAAGCTCGTAGGAGGAGCCAA 110281 Query 2411732 GCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAA 2411791 | || |||||||| || || | |||||| | || ||| | || |||||| | Sbjct 110280 GGACGAATTCGAGGCGGTCGATGGGGACGTTGACAGCCTTGAGGAGTGCGGTGATGGTGA 110221 Query 2411792 ACTCGTACCA-GCGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGG 2411850 | ||| | | ||| ||| || |||||| || || | ||| |||||||||| Sbjct 110220 AGCGGTAGTATTCAGCA-CGGAACTTGACGAGCTCGATGGGTGCTTTGAGATTGTCGAGG 110162 Query 2411851 TGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCC 2411910 | |||| | |||||||| ||| ||| | || |||| || || ||| || | || Sbjct 110161 AAGCCGTGGATGTCGGCAAGGAGAATCTTGACGTGACAGCCTGCTGCGAGGAACTGTGCG 110102 Query 2411911 AGTTTAAAGATGGGCACAAA 2411930 || || | ||| || || || Sbjct 110101 AGCTTGAGGATAGGTACGAA 110082 >seq5 Length=465174 Score = 105 bits (116), Expect = 1e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 2175309 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 2175368 |||||||||| ||||||| || ||||||||||||||||| || ||||||||||||||| Sbjct 315869 CCGTCGAGGTGGGGGTCGTTGAGCAGGCCCTTCCACCCGAGTGTGGTGCGCGGCTTTTCG 315810 Query 2175369 ACATAGGCGCGCATGACCACCAGGAGAGCGTCGCCGACCTCTGTCTCGGCAAAGGTGCGC 2175428 | ||| |||||||||| | | ||| |||| | | ||| ||||| || | | Sbjct 315809 AAGTAGACGCGCATGACGATGTGCAGATCGTCCCGCAGTTCT---TCGGCCTTGGCGGCC 315753 Query 2175429 AGCCGTCGGCCATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGACC 2175488 | ||| ||| | || || | || | ||||||||| | || ||||||||||| || Sbjct 315752 AACCGGCGGGCGTAGTCCATCGCCGCTTCCGGATCGTGCACAGAGCACGGACCGACTACG 315693 Query 2175489 AC 2175490 || Sbjct 315692 AC 315691 >seq153 Length=141254 Score = 96.9 bits (106), Expect = 5e-14 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC-GCCAGGCGGCCGG 1485604 ||||||||||||||||| | ||| || |||||| || || || || | || Sbjct 130037 GGTCTGGATCTCGCGGGAGGAGATGGTCGACTTCTTGTT-GTAGGCAGCGAGCTTGGAGG 130095 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| ||| |||| ||||||||||| |||||||||| || ||||| | Sbjct 130096 CCTCGGTGGCGACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGAATGGACATGGCGC 130155 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||| ||||| ||||||||||| || Sbjct 130156 GGTTGGAGATACCAGTGTCAGGGTGGACCTGCTTGAGGAC 130195 >seq13 Length=59260 Score = 89.7 bits (98), Expect = 8e-12 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 429510 CTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATG--- 429566 || ||| |||||||| |||||||||||| | || || |||| ||| |||| Sbjct 48170 CTGCAGTACGGGTGGAAAGTCGAGCGCCACAT---CAACGACGACGACGTCATCATCTTC 48226 Query 429567 AACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCC 429626 ||||| ||||| ||||| |||| || ||| ||| | ||| || | |||||| Sbjct 48227 AACCGTCAGCCCTCGCTGCACAAGGAGTCTATGATGGGTCACCGCGTCAAGGTCATGCCA 48286 Query 429627 GG-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGG 429685 ||| || ||||| ||||||||| | || || | ||||||||||| || || || Sbjct 48287 TACTCG-ACTTTCCGTCTCAACCTGTCTGTCACATCTCCTTACAACGCCGATTTCGATGG 48345 Query 429686 CGACGAGATGAACCTGCACGTGCCCCAG 429713 ||||||||||| || ||||| |||||| Sbjct 48346 TGACGAGATGAATCTTCACGTCCCCCAG 48373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916210445398382