Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq53 118 1e-21 seq170 82.4 7e-11 seq136 82.4 7e-11 >seq53 Length=112647 Score = 118 bits (130), Expect = 1e-21 Identities = 133/176 (76%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||||||||| ||||| |||||||| || | | | | |||| ||||| ||||||||| Sbjct 70438 GGTGGACTCCTTCTGGATATTGTAGTC--CGAAAGGGTACGACCATCCTCAAGCTGCTTG 70495 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || ||||||||||||||||| |||||||||||||| ||||| | Sbjct 70496 CCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTC 70555 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | || | ||||||| | |||||| |||| ||||| || |||||||| Sbjct 70556 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 70611 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || | ||| ||| | ||||| |||||||| || Sbjct 69699 GTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTGCGACCA-TCCTCCAGCTGCTTACC 69757 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| ||||| ||| Sbjct 69758 AGCAAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 69817 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | | ||| || || | ||| | ||| ||||| ||||| || Sbjct 69818 GACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGGT 69877 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 69878 CTTGACGAAGATTTGCAT 69895 Score = 105 bits (116), Expect = 6e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 |||| |||||||| ||||| || ||||| ||| || ||| | | | || |||||||| Sbjct 70149 TGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCA-TCTTCGAGCTG 70207 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || | |||||||| || |||||||| || |||||||| |||||| Sbjct 70208 CTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCTTGGATCTT 70267 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | || |||| | ||| || |||| |||| ||| |||||||| Sbjct 70268 GCTCTTGACGTTGTCGATGGTATCGGATGACTCGACTTCGAGAGTGATGGTCTTGCCGGT 70327 Query 133637 CA 133638 || Sbjct 70328 CA 70329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || ||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 69968 GTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTT 70027 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | |||| || || | | ||| || || | ||| | Sbjct 70028 GTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAAT 70087 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || ||||| || ||||| Sbjct 70088 GGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 >seq170 Length=170908 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| ||| |||||| ||||||||||| Sbjct 129701 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACC-GTCCTCAAGCTGCTTGCC 129759 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || || |||||||||||||| |||||| ||| Sbjct 129760 GGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGACTT 129819 Query 133583 GA 133584 || Sbjct 129820 GA 129821 >seq136 Length=202766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||||||||||||||| Sbjct 67002 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA-TCCTCGAGCTGCTTGCC 66944 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| | || || ||||||||||| || || ||||| |||||||| | | |||| Sbjct 66943 GGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGCGCTCTT 66890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418757547120