Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq50 163 4e-34 seq249 113 6e-19 >seq50 Length=575836 Score = 163 bits (180), Expect = 4e-34 Identities = 213/289 (74%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||| ||||| ||||| ||||||||||||||| |||| ||| Sbjct 304071 TGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATCGATCTCTC 304013 Query 1455839 CGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| | | ||||| || | | ||||||||||||| |||||| || Sbjct 304012 CAAGGACCTGCACGACTGGAACAAGCGCCTCAACGACGACGAGCGCTTCTTCATCTCCCA 303953 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||||||||| ||| ||||| ||| |||||||||||| |||||| || | || || | Sbjct 303952 CGTCCTCGC-TTTCTTCGCAGCCTCCGATGGCATCGTCAACGAGAATCTCGTCGAGCGGT 303894 Query 1455956 T-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 | | || ||||| ||| | || || || || | || ||||| ||||||||| || Sbjct 303893 TCTCTGGT-GAGGTACAAATTCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGATG 303835 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 |||||| ||||| | || || ||||| |||||||||||||| ||| ||| Sbjct 303834 GAAAACGTCCACGCCGAGACATACTCTCTCCTGATCGACACATACATCA 303786 Score = 129 bits (142), Expect = 8e-24 Identities = 186/255 (73%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||| ||||||||||||||| ||| | ||||| |||| ||| | || || | Sbjct 303417 ATCATCACCGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTC--CGATGCTCTCCCCTGCG 303360 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | || |||| |||||||| || ||||||||||||||||| || || ||||||||||| Sbjct 303359 CACTACTCGGTATGAACGCTACT-CTCATGTGCCAGTACATCGAGTTC-GTCGCCGACCG 303302 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| ||| || ||| | ||| ||||| || ||||||| ||| | | Sbjct 303301 TCTGCTCCTGGCTCTTGGCAACCCC-AAGTACTACAACGCGACCAACCCCTTCGACTTCA 303243 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| |||||||| | |||||||||||||| |||||| || | ||| || ||| Sbjct 303242 TGGAGAACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACC 303183 Query 1456760 CCAAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 303182 AGAAGGCCGGTGTCA 303168 Score = 89.7 bits (98), Expect = 7e-12 Identities = 119/159 (75%), Gaps = 11/159 (7%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| | |||||| ||||| | ||| || ||| ||| Sbjct 303678 AAGAAGGCCGACTGGGCCCTACGATGGATCTCGGACAAGAA----CTCTAC-CTTCGCCA 303624 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237 | || ||||| | ||||||||| |||||||||||||| ||| || ||| ||| || Sbjct 303623 ACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCGTTC-GCGTCC 303565 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||| ||||| |||||||| || || |||||||||||| Sbjct 303564 ATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGTCTT 303526 >seq249 Length=183263 Score = 113 bits (124), Expect = 6e-19 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| ||||||||| ||| ||||| ||| |||| |||||||| || || Sbjct 118851 ACATACGACTACATGTCGCAAAAGTACTTCACACACGCGTCGCCGACGCTCTTCAACGCG 118792 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || ||| || | || || ||||| || | |||||||||| || || Sbjct 118791 GGCACACCATCCCCACAAATGTCATCTTGCTTCCTCATCGACATGAAGGAAGACAGCATT 118732 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || ||||| ||||| | ||| || ||| | ||||||||| | || ||||| || Sbjct 118731 GACGGTATCTACGACACATTGAAGACTTGTGCGTTGATCTCCAAGACTGCTGGCGGTATT 118672 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | | ||| | || ||| | ||| |||| | | || ||||| || Sbjct 118671 GGTCTCAATGTGCACCGCATTCGTGCCACTGGCTCCTATATCGGAGGAACCAATGGAACA 118612 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||||| || | || |||||||| || | ||| |||| || ||||||||||||||| Sbjct 118611 TCGAACGGTCTCATCCCTATGCTTCGTGTCTACAACAACACCGCCCGCTACGTCGACCAG 118552 Score = 100 bits (110), Expect = 4e-15 Identities = 125/165 (76%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 262068 CGCG-GACCGTC-GTGCCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGA 262125 |||| ||||||| |||||| | || |||||| ||||| ||| ||| || | ||| Sbjct 118275 CGCGAGACCGTCCGTGCCCAAA----AGCTCTGGTATGCCATCCTCGAGGCTCAGACCGA 118220 Query 262126 GACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAA 262185 ||| |||| |||| |||| | |||||||| |||| |||| || ||||||||| |||| Sbjct 118219 GACTGGCAACCCCTTCATGCTTTACAAGGATGCCGCCAACAGGAAGAGCAACCAGAAGAA 118160 Query 262186 CCTGGGCACCA--CGACAGAGGCCAACCTGTGCACCGAGATCGTC 262228 ||| || |||| || ||| ||||||||||||| |||||| || Sbjct 118159 CCTCGGTACCATTCG-CAGCT-CCAACCTGTGCACTGAGATCATC 118117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177778599278756