Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq50 95.1 4e-14 seq249 91.5 5e-13 >seq50 Length=575836 Score = 95.1 bits (104), Expect = 4e-14 Identities = 135/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 443679 CTCGAACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGA 443738 |||| || |||| ||| | ||||| | | || || || || ||||| | ||||| || Sbjct 303649 CTCGGACAAGAAC-TCT-ACCTTCGCCAACCGTCTCGTTGCCTTTGCCGCCGTCGAGGGC 303592 Query 443739 CTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCA 443798 | || || || || | | || || |||||||||||| |||| |||||||| || |||| Sbjct 303591 ATCTTCTTCAGTGG-ATCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGTGGTCTGATGCC 303533 Query 443799 CGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGC 443858 |||||| |||||| ||| || || || ||| |||||||| |||| ||||| || Sbjct 303532 CGGTCTTACCTTTTCTAATGAGCTCATTTCTCGTGACGAGGGCATGCACACAGACTTTGC 303473 Query 443859 CTGTCT 443864 ||||| Sbjct 303472 TTGTCT 303467 >seq249 Length=183263 Score = 91.5 bits (100), Expect = 5e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | ||||| | ||||||| || ||||||||||| || || ||| ||| Sbjct 118599 ATCCCTATGCTTCGTGTCTACAACAACACCGCCCGCTACGTCGACCAGGGTGGCAACAAG 118540 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 ||||| || |||||| |||||||||| ||||| |||||||| ||| Sbjct 118539 CGCCCTGGTGCGTTCGCCATCTACCTCGAGCCATGGCACGCTGAC 118495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588329121512410