Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq63 163 9e-35 seq53 140 1e-27 seq170 84.2 7e-11 >seq63 Length=31160 Score = 163 bits (180), Expect = 9e-35 Identities = 461/705 (65%), Gaps = 11/705 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || || ||| | || || || || ||||| |||| | | | | |||| || Sbjct 14969 GCTATCGGTATTGATCTCGGAACCACGTACTCTTGCGTTGGTATCTTCCGCGATGACCGC 14910 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | ||||| ||||| ||||| || |||||| |||| || || || | ||| ||||| || Sbjct 14909 ATCGAAATCATTGCCAATGACCAGGGTAACCGAACTACTCCCTCGTTCGTCGCATTCACG 14850 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || |||||||| | |||||||| || || || || || | || || || | || Sbjct 14849 GACACTGAGCGCCTCATTGGTGACTCCGCGAAGAACCAGGTCGCCATGAACCCTATCAAC 14790 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACA 349434 || || ||||| |||||||| | || || | | || | ||| | || || Sbjct 14789 ACAGTCTTTGACGCTAAGCGTTTGATCGGACGTAAGTTCGCCGACGCTGAGGTC----CA 14734 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 | || | || || || ||||| | || | | | ||| || | || || | || Sbjct 14733 GGCCGACATGAAGCACTTCCCTTTCAAGGTCAT-CGACAAG--GGCGGCAAGCCCGTCAT 14677 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 | |||| || | || || || | || || ||||||||| || || || ||||| Sbjct 14676 TCAGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACACCCGAAGAGATCTCGTCCATGGT 14617 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | | || || |||| ||| | |||||| | || | |||| || || | | || || Sbjct 14616 TCTTGTCAAGATGAGGGAGACTGCTGAGTCCTACCTCGGTGGTACCGTCAACAACGCCGT 14557 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | || || || ||||| || || || | || ||| || || || |||||||| Sbjct 14556 CGTCACAGTCCCTGCCTACTTCAACGACTCGCAACGTCAGGCTACTAAGGATGCTGGTCT 14497 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | || || || | || || || || || || || || || ||||| || Sbjct 14496 CATTGCTGGCCTTAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATTGCCTA 14437 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | || ||| || || | || || || ||||| |||||||| Sbjct 14436 CGGTCTCGACAAGAGGACTGAGGGCGAGCGTAACGTCCTCATCTTCGATTTGGGTGGTGG 14377 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || | || |||| ||||| || || || || || | ||||| Sbjct 14376 TACATTCGATGTCTCCCTCTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCGACTGC 14317 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 ||| || || || | ||||| || || || || || ||||| || Sbjct 14316 TGGAGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGT 14272 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 183633 TTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCA 183692 |||||||||||||| |||||| | | || || | | | | | || || || ||| Sbjct 14236 TTATGTTTTCTTTTGAATTCATTGGTGAAGTGGTTTACAAGACGGTTGTCGAAGTCCTCA 14295 Query 183693 CCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTT 183752 ||||| || || || || |||||||| | || || || || || || || ||||| | Sbjct 14296 CCACCCAAGTGAGTGTCTCCAGCAGTCGACTTGACCTCGAAGATACCCTCCTCAATGGTC 14355 Query 183753 AAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || | || ||||| |||||||||||||||||||| || Sbjct 14356 AAGAGGGAGACATCGAATGTACCACCACCCAAATCGAA 14393 >seq53 Length=112647 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || |||||||| || || || || || | Sbjct 69889 TTTGCATACCACCACGGAGACGGAGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGT 69948 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || |||| || || || ||||| || || || ||||| ||||| ||||| ||||| | Sbjct 69949 AGTCTGATAGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGT 70008 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || |||||||| || | || ||||| ||||| | ||| || | Sbjct 70009 CAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACG 70068 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||| ||||| || || || || || || || || ||||| Sbjct 70069 ACTCAACCTCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || ||||| || || || | ||| || ||||| || | Sbjct 69689 CAAG-TGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTGCGACCATCCTCCA 69747 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| ||||| ||||| ||||| || || || || || ||||||| Sbjct 69748 GCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAA 69807 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || ||||| ||||| | ||| || | ||||| ||||| |||| ||||| | Sbjct 69808 TCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTCTTGC 69867 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || || ||||| Sbjct 69868 CTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 123 bits (136), Expect = 8e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||| ||||| || || || ||||| || || || || | Sbjct 70117 TTTGCATACCACCACGCAGGCGTAGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGT 70176 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || |||||||| || || || ||||| ||||| | || ||||||| Sbjct 70177 AGTCGGACAAGGTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGAT 70236 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 ||||||| || || || || || || || || ||| || || || || || | ||| ||| Sbjct 70237 CAGGAGGGATACCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGGAT 70295 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || || | ||||| ||||| Sbjct 70296 GACTCGACTTCGAGAGTGATGGTCTTGCCGGT 70327 Score = 116 bits (128), Expect = 1e-20 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||||| | || || || || || || ||||| || || ||||| || || Sbjct 70405 CATACCACCACGTAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTC 70464 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || || |||||||| || || ||||| || || Sbjct 70465 CGAAAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGG 70524 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| ||||| || |||||||| || ||| || || || || || | || || | | Sbjct 70525 AGGAATGCCTTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTGTCGGAAGACT 70583 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || || || | ||||| ||||| Sbjct 70584 CCACCTCGAGGGTGATCGTCTTGCCGGT 70611 >seq170 Length=170908 Score = 84.2 bits (92), Expect = 7e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 129668 ATACCACCACGGAGACGAAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 129727 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || ||||| || || || || ||||| | || ||||| || || Sbjct 129728 GAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGG 129787 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATC 140668 ||||| ||||| || ||||| || || | || ||||| || Sbjct 129788 GGAATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTC 129828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247838001414