Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq249 224 1e-53 seq118 98.7 1e-15 seq50 98.7 1e-15 >seq249 Length=183263 Score = 224 bits (248), Expect = 1e-53 Identities = 515/765 (67%), Gaps = 28/765 (4%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||||||||| | ||||||||| || ||| | | | ||||| |||| Sbjct 118904 TCATGCGCGTCGCTGTTGGTATCCACATGGAGGACATTGAGAAGGCCATCGAGACATACG 118845 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| ||||||||||| || ||||| |||| || || |||||||| || || Sbjct 118844 ACTACATGTCGCAAAAGTACTTCACACACGCGTCGCCGACGCTCTTCAACGCGGGCACAC 118785 Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| ||| || ||||| |||||||| | | |||||||| ||| || ||||| Sbjct 118784 CATC-CCCACAAATGTCATCTTGCTTCCTCATCGACATGAAGGAAGACAGCATTGACGGT 118726 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || | ||| ||||| ||||||||| | || ||||| ||| || Sbjct 118725 ATCTACGACACATTGAAGACTTGTGCGTTGATCTCCAAGACTGCTGGCGGTATTGGTCTC 118666 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCC 53488 | ||| | | | ||||| | ||| | ||| || || || || | ||| Sbjct 118665 AATGTGCACCG-CATTCGTGCCACTGGCTCCTATATCGGAGGAACCAATGGAACATCGA- 118608 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || | |||||||| || |||| ||||||||| ||||| |||||| |||||||| Sbjct 118607 -ACGGTCTCATCCCTATGCTTCGTGTCTACAACAACACCGCCCGCTACGTCGACCAGGGT 118549 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || |||||| || |||||||||||||||||||||| |||||||| ||| | | Sbjct 118548 GGCAACAAGCGCCCTGGTGCGTTCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTC 118489 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT 53667 | || ||||| || | ||| || || | || ||| | || ||| || ||| |||| Sbjct 118488 GGCTTCCTCGACTTGAGGAAGAACCACGGCAAGGAGGAGGTTCG-TGCTCGCGACTTGTT 118430 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 || |||||||| || || || |||||||| || || || | | |||||| Sbjct 118429 CTATGCCCTGTGGATCCCCGATCTTTTCATGCAGCGTGTCCAGGAGAATGGCGAGTGGAC 118370 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT------- 53780 || |||||||| ||||||||||| || || | |||||||| || |||| Sbjct 118369 GCTTATGTGCCCCAACGAGTGCCCAGGTCTTGCTGACGTCTACGGCGACGAGTTCGTTGC 118310 Query 53781 --TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 | |||||| |||| || | | | | |||| ||| ||| ||| || Sbjct 118309 CCTGTACGAGAAGTATGAGA-GAGAGAA--TAAGGGTCGC------GAGACCGTCCGTGC 118259 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| |||| |||||| || ||| ||||| || | || | |||| Sbjct 118258 CCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTCATGCT 118199 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||||||| | | |||| ||||||||||||||||||| |||| Sbjct 118198 TTACAAGGATGCCGCCAACAGGAAGAGCAACCAGAAGAACCTCGG 118154 Score = 113 bits (124), Expect = 5e-20 Identities = 300/451 (67%), Gaps = 17/451 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| |||||||| || || ||||| || || || || | |||||| | |||||| Sbjct 117633 CGCAACTCTCTGCTCGTTGCACCTATGCCCACTGCCTCCACTTCCCAGATCCTCGGCAAC 117574 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | ||||||||| || || || || |||||| Sbjct 117573 AACGAGTGCTTCGAGCCATACACATCAAACATCTACTCTCGTCGTGTGCTCGCTGGTGAG 117514 Query 55604 TTTGTCATGATCAACAAGCACCTCGT----CAAGGACCTGCAGAAGATCAACAAGTGGAA 55659 || | ||||| ||| || |||||| || | || |||| Sbjct 117513 TTCCAGGTTGTCAACC----CCTGGTTGCTCAAGGATCTTGTCGACATGGGTCTTTGGAC 117458 Query 55660 CCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAG- 55714 | | | || |||| || || | || |||| || || ||||| ||| | Sbjct 117457 CGAGAACATGAAGAACCGCATCATCGCCG--ACGGTGGTTCTATCCAGCGCATCCCCAAC 117400 Query 55715 ATTCCTC-TGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 || ||| || | ||||| | ||| ||| || ||||| || | ||| | | Sbjct 117399 ATCCCTGATGAGA-TCAAGACCTTATACAAGACTGTCTGGGAAATCTCGCAGCGTACCAT 117341 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 ||| | ||| ||||| |||||||| | ||| |||||||| ||||| ||||||||| Sbjct 117340 CATTCAGATGGCCGCTGACCGTGGTGCCTTCATTGACCAGTCTCAGTCACTGAACATCCA 117281 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| || | ||| | ||| |||| | | ||| |||||||| ||| |||||| || Sbjct 117280 CATGAAGGAGCCTACCATGGGCAAGATCACCTCCATGCACTTCGCCGGATGGAAGCTTGG 117221 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| || ||||||||||| || ||| Sbjct 117220 TCTCAAGACCGGCATGTACTATCTCCGAACC 117190 >seq118 Length=153408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/281 (69%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| || |||||| | |||||||| | ||| |||||||| |||||| ||||| Sbjct 147201 GGTGACAGACGAGTGTAGATGTAACGGGCGCTGGCAGCATCACCGCCACCCTGCAGACGG 147260 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | ||||||||||||||| ||| | |||||| | || ||||||||||| Sbjct 147261 GAACCGAAGTTACCACTCGGCTCCAAGCAGTTGATGTTGTTTGAACCAACAAAGTTTTGC 147320 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||| || || || ||||| | | || ||||| || || | || | ||| Sbjct 147321 GCCAGACCCACGATAGTGCCTTGCATGGATGCTTCACCGTGAGCGTA-GTCGGTAGATCC 147379 Query 117473 -GCCACGTAGCCCGCCAGCTGAGCCACCTT--CATGTCTGACGTCAGGTTCTTCTTGAGG 117529 | ||| | || ||||||| | ||||| ||| | || || | ||| | ||| | Sbjct 147380 AGAGACGGAACCAGCCAGCTCGACGACCTTGACATCTTTG-CG-AATGTTTCGCCTGAAG 147437 Query 117530 CAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||| || | ||||| ||||||| ||||| | |||||| Sbjct 147438 CAGGTGTAGAGGACCTTTCGCTGACCAGGCTTGAAACCATC 147478 >seq50 Length=575836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 ||||| ||||| | ||| || ||||| || ||||||||||||| ||| ||||||| | Sbjct 303512 TCATTAGAAAAGGTAAGACCGGGCATCAGACCACGCTTCTTCAGCCAGAAGATGGACGCG 303571 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || || ||||||||||||||||| ||||| |||||||| || || || | ||||| Sbjct 303572 AACGATCCACTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGACGGTTGGCGAA 303630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213688012400