Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq219 120 2e-22 >seq219 Length=188997 Score = 120 bits (132), Expect = 2e-22 Identities = 434/680 (64%), Gaps = 52/680 (8%) Strand=Plus/Plus Query 29824 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29883 ||| ||| ||||||| |||||| | ||||||| ||| | || ||| | | || Sbjct 115313 GTTGATCTTCAGTGTAGGAAAGTCGCGTGGCTCCCGCTCTACTTGCACCTTGACTGCGTC 115372 Query 29884 CACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAG 29943 |||| ||| ||| || || ||||| |||| | | || ||| ||||||| || Sbjct 115373 GACGTGATCGCAGTACACATGTGCGTCGCCCATGGTATGTGTAAAGGTTCCCGGTGTGAG 115432 Query 29944 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 30003 || ||| || |||| ||||| ||| || |||| ||| |||||||||||||| || Sbjct 115433 ATCGCAGACATGCGCCAGCATGTGCGTTAGCAGAGCGTATGATGCGATGTTAAAGGGCAC 115492 Query 30004 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA-----CACGAGAGCTCTCCG--- 30055 ||||| ||||| || | || | |||||| || | || | | | ||| | Sbjct 115493 GCCGAGTCCCATATCGCAAGAGCGCTGGTACAGTAGCGAATGCAGCACACCCCTCGGCCT 115552 Query 30056 -------TCGCTC---------------------ACGTAAAACTG---ACACATGGCGTG 30084 |||| | ||||| ||||| | |||| || Sbjct 115553 TTCTGTCTCGCCCTCCTTCTGCCTGGGGAACGAAACGTAGAACTGTGCAAACATA---TG 115609 Query 30085 GCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCG 30144 || |||||||||||||| | ||| || |||||||| |||| || ||||| | Sbjct 115610 ACAAGGAGGAAGAGCCATCTTCCTCAAATCCGCCGGGTTCCATGCGCTCAGAATGATTCT 115669 Query 30145 CCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCAT 30204 | || | || ||| | | || | | | | || ||| ||||| || Sbjct 115670 TCGATCGTACGGTCGATTCTTCAACTTATCGATAACCTCTGCCAACTGGTCCACGCCTTG 115729 Query 30205 CCCCGAGTAGTCTGCCCTCATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACC 30263 ||| | ||||||||| || || || | ||| ||||| |||||||||| ||| ||||| | Sbjct 115730 CCCTGTGTAGTCTGCA-TCGTGCCCCTTGTATTCTGCACCGAAATGCCGCCATTGGAAGC 115788 Query 30264 CGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGT 30323 ||||||| || || |||||||||||||| ||| ||||| |||| | || Sbjct 115789 CGTACACAGGCCCAAGGTCTCCCTCTTCGTGGTGTGACAAGCCGACGCTGTCGAGGTAGG 115848 Query 30324 CTCTGGAACCGTTGGCGTCCCAGATCTT--TACCCCCTTCT--CAGAGAGCTCTTTGGAG 30379 | ||||||||| ||||||||||||| | || ||||| ||| || ||| || Sbjct 115849 TGCGCGAACCGTTGCCGTCCCAGATCTTGATGCCAGCTTCTTGCAGGGA----CTTGTAG 115904 Query 30380 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30439 | |||||| || |||||||| || || || | | ||||| | ||| || | Sbjct 115905 TGTGTGGAGCCAGCAACGAACCAGAGAAGTTCGCCGATTACGGCGCGCAGAAACACGCGT 115964 Query 30440 TTGGTCGTGAGGAGGGGAAA 30459 ||||||||||||||||| || Sbjct 115965 TTGGTCGTGAGGAGGGGTAA 115984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308726255096