Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq53 140 8e-28 seq170 100 7e-16 >seq53 Length=112647 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || ||||| || || |||| ||||| |||| ||| || | |||||| Sbjct 70140 AGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 70199 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || || || || || ||||| ||||||||| Sbjct 70200 TCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGGATACCCTCCTTGTCT 70259 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | || || || | ||||| ||| Sbjct 70260 TGGATCTTGCTCTTGACGTTGTCGATGGTATCGGATGACTCGACTTCGAGAGTGATGGTC 70319 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 70320 TTGCCGGTCA 70329 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| |||||| || | | || | ||||| Sbjct 70424 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGAAAGGGTACGACCATCC 70483 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || |||||||| ||||| ||||||||||| Sbjct 70484 TCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 70543 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 70544 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 70603 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 70604 TTGCCGGT 70611 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||||||||| ||||| || |||| ||||| || | | || | || ||| Sbjct 69912 AGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGCGTACGGCCGTCT 69971 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || |||||||| Sbjct 69972 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 70031 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||| || || | || || || | || || ||| Sbjct 70032 TGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACCTCAAGGGTAATGGTC 70091 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 70092 TTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 >seq170 Length=170908 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || |||| ||||| |||| | || | || || Sbjct 129686 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCGTCC 129745 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || ||||| ||||||||||| Sbjct 129746 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 129805 Query 225622 TGGATCTT 225629 |||||||| Sbjct 129806 TGGATCTT 129813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526035594572