Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq219 129 4e-25 >seq219 Length=188997 Score = 129 bits (142), Expect = 4e-25 Identities = 436/680 (64%), Gaps = 52/680 (8%) Strand=Plus/Plus Query 27090 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 27149 ||| ||| ||||||| |||||| | ||||||| ||| | || ||| | | || Sbjct 115313 GTTGATCTTCAGTGTAGGAAAGTCGCGTGGCTCCCGCTCTACTTGCACCTTGACTGCGTC 115372 Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 |||||||| ||| || || ||||| |||| ||| || ||| ||||||| || Sbjct 115373 GACGTGATCGCAGTACACATGTGCGTCGCCCATGGTATGTGTAAAGGTTCCCGGTGTGAG 115432 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 || ||| || |||| ||||| ||| || |||| ||| |||||||||||||| || Sbjct 115433 ATCGCAGACATGCGCCAGCATGTGCGTTAGCAGAGCGTATGATGCGATGTTAAAGGGCAC 115492 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA-----CACGAGA----------- 27313 ||||| ||||| || | || | |||||| || | || | | Sbjct 115493 GCCGAGTCCCATATCGCAAGAGCGCTGGTACAGTAGCGAATGCAGCACACCCCTCGGCCT 115552 Query 27314 ---------GCTCTCCATC-GCTT----------ACGTAAAACTG-----ACATATGGCG 27348 || |||| || || | ||||| ||||| ||||||| | Sbjct 115553 TTCTGTCTCGCCCTCCTTCTGCCTGGGGAACGAAACGTAGAACTGTGCAAACATATGAC- 115611 Query 27349 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 27408 | |||||||||||||| | ||| || |||||||| |||| || ||||| Sbjct 115612 ----AAGGAGGAAGAGCCATCTTCCTCAAATCCGCCGGGTTCCATGCGCTCAGAATGATT 115667 Query 27409 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 27468 | | || | || ||| | | || | | | | || ||| ||||| || Sbjct 115668 CTTCGATCGTACGGTCGATTCTTCAACTTATCGATAACCTCTGCCAACTGGTCCACGCCT 115727 Query 27469 ATCCCCGAGTAGTCTACCCTCATGTCCGT-GTACTCTGCTCCGAAATGCCTCCATTGGAA 27527 ||| | ||||||| | || || || | ||| ||||| |||||||||| ||||||||| Sbjct 115728 TGCCCTGTGTAGTCTGCA-TCGTGCCCCTTGTATTCTGCACCGAAATGCCGCCATTGGAA 115786 Query 27528 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 27587 |||||||| || || |||||||||||||| ||| ||||| |||| | | Sbjct 115787 GCCGTACACAGGCCCAAGGTCTCCCTCTTCGTGGTGTGACAAGCCGACGCTGTCGAGGTA 115846 Query 27588 GTCTCTGGAACCGTTGGCGTCCCAGATCTT--TACCCCCTTCTCGGAGAGCTCTTTGGAG 27645 | | ||||||||| ||||||||||||| | || ||||| | || | ||| || Sbjct 115847 GGTGCGCGAACCGTTGCCGTCCCAGATCTTGATGCCAGCTTCTTGCAGGG--ACTTGTAG 115904 Query 27646 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 | |||||| || |||||||| || || || | | ||||| | ||| || | Sbjct 115905 TGTGTGGAGCCAGCAACGAACCAGAGAAGTTCGCCGATTACGGCGCGCAGAAACACGCGT 115964 Query 27706 TTGGTCGTGAGGAGGGGAAA 27725 ||||||||||||||||| || Sbjct 115965 TTGGTCGTGAGGAGGGGTAA 115984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505677861278