Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq53 167 5e-36 seq136 125 1e-23 seq170 111 3e-19 seq50 100 6e-16 >seq53 Length=112647 Score = 167 bits (184), Expect = 5e-36 Identities = 165/208 (79%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||||||||| || || || |||| ||| || || |||||||||||||| | Sbjct 70124 ACCACCACGCAGGCGTAGGACAAGGTGTAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 70183 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||||||||| || || || || || || |||||||| || || || ||| | Sbjct 70184 CAAG-GTGCGGCCATCTTCGAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAG 70242 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 | ||||||||||||||||||||| ||||| || ||| | ||||| || || || | ||| Sbjct 70243 GGATACCCTCCTTGTCTTGGATC-TTGCTCTTGACGTTGTCGATGGTATCGGATGACTCG 70301 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCA 283077 |||||||||||||| ||||| || |||| Sbjct 70302 ACTTCGAGAGTGATGGTCTTGCCGGTCA 70329 Score = 141 bits (156), Expect = 2e-28 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||| |||||||| | Sbjct 70408 ACCACCACGTAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGA 70467 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| || || || ||||||||||||| || || ||||| || Sbjct 70468 AAGGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 70527 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| || ||| ||||| || ||| | ||||| ||||| |||| || | Sbjct 70528 AATGCCTTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTCCA 70586 Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||||||||| || || Sbjct 70587 CCTCGAGGGTGATCGTCTTGCCGGT 70611 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| ||||| |||| || | ||| || || ||||| |||||||| | Sbjct 69669 CCGCCACGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAGTCCGAG 69728 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| || || || || |||||||| | ||| || |||||| || Sbjct 69729 AGTGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGTGGG 69788 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || || | || || || ||||| | || || Sbjct 69789 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAACC 69848 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| || ||||| Sbjct 69849 TCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 69895 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || ||||||| || | || ||| || |||||||||||||| | Sbjct 69896 ACCACCACGGAGACGGAGTACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGA 69955 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| || || || || || || || ||||| | ||| || |||||| || Sbjct 69956 TAGCGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGG 70015 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | || || || ||||| | || || Sbjct 70016 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCCGACGACTCAAC 70075 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| || ||||| Sbjct 70076 CTCAAGGGTAATGGTCTTGCCTGTCAGGGTCTTGACGAAGATTTGCAT 70123 >seq136 Length=202766 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 67033 ACCACCACGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 66974 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 66973 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 66914 Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015 ||| |||||||||||| | |||| Sbjct 66913 AATGCCCTCCTTGTCTGCGCTCTT 66890 >seq170 Length=170908 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| ||||| || | || || || |||||||||||||| | Sbjct 129670 ACCACCACGGAGACGAAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 129729 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || ||||| || || || ||||| |||||||| || || ||||| || Sbjct 129730 AAGGGTGCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGG 129789 Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015 ||| || |||||||| |||||||| Sbjct 129790 AATGCCTTCCTTGTCCTGGATCTT 129813 >seq50 Length=575836 Score = 100 bits (110), Expect = 6e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| |||||||| | | ||| ||| | || ||| Sbjct 303417 ATCATCACCGAGGCCGTCGAGATTGAGCAGGAGTTCCTGTCCGATGCTCTCCCCTGCGCA 303358 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||| ||||| ||| ||||||| | || || ||||| ||||| || || ||| | Sbjct 303357 CTACTCGGTATGAACGCTACTCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTG 303298 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || |||| || || || || || ||| | | |||||||||| || |||||| Sbjct 303297 CTCCTGGCTCTTGGCAACCCCAAGTACTACAACGCGACCAACCCCTTCGACTTCATGGAG 303238 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| |||||||| | ||||| || | | Sbjct 303237 AACATCTCGCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAAG 303178 Query 230403 CCCGGTGT 230410 ||||||| Sbjct 303177 GCCGGTGT 303170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734666965052