Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascochyta_20rabiei_20[genbank_20GCA_5F001630375.1_202016-04-19] 338 sequences; 34,658,250 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq53 143 6e-29 seq136 93.3 1e-13 seq170 91.5 4e-13 >seq53 Length=112647 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || |||||||||||||||||||| || ||||||||||| |||||||| Sbjct 70613 TCACCGGCAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGA 70554 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| ||||| || ||||| |||||||| || || ||||| ||||| | Sbjct 70553 GCAAGATTCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGCCTGATCTTTGCCGGCA 70494 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || ||| | || || || |||| || || || || || | Sbjct 70493 AGCAGCTTGAGGATGGTCGTACCCTTTCGGACTACAATATCCAGAAGGAGTCCACCCTCC 70434 Query 178123 ATCTTGT 178129 | || || Sbjct 70433 ACCTCGT 70427 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || ||||| || || || ||||| ||||| || || || Sbjct 70120 CAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCGGAT 70061 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 70060 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAG 70001 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| ||||| || | || || | || || ||| || Sbjct 70000 CGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACGCTATCAGACTACAACATC 69941 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 69940 CAGAAGGAATCTACTCTCCA-CTTG 69917 Score = 122 bits (134), Expect = 2e-22 Identities = 140/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 70327 ACCGGCAAGACCATCACTCTCGAAGTCGAGTCATCCGATACCATCGACAACGTCAAGAGC 70268 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| || || |||||||| || ||||| || | |||||||| || || Sbjct 70267 AAGATCCAAGACAAGGAGGGTATCCCTCCTGATCAGCAGCGCTTGATCTTCGCTGGCAAG 70208 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||||||||||| | || |||| |||| || ||| |||| || || || ||||| || Sbjct 70207 CAGCTCGAAGATGGCCGCAC-CTTGTCCGACTACAACATCCAGAAGGAGTCCACACTACA 70149 Query 178124 TCTTGT 178129 ||||| Sbjct 70148 CCTTGT 70143 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || ||||| || || || ||||| ||||| || || || Sbjct 69892 CAAATCTTCGTCAAGACCCTGACAGGCAAGACCATTACCCTTGAGGTTGAGTCGTCGGAT 69833 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || ||||| || |||||||| Sbjct 69832 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAG 69773 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || || | || || || || Sbjct 69772 CGTCTCATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACACTCTCGGACTACAATATC 69713 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 69712 CAGAAGGAGTCGACGCTGCA-CTTG 69689 >seq136 Length=202766 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || ||||||||||| || |||||||| Sbjct 66899 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAG 66958 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | |||||| |||| || ||| |||| || || || || || || || || Sbjct 66959 GATGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGT 67014 >seq170 Length=170908 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| ||||| || || ||||||||||| || | ||||||||||| || Sbjct 129813 AAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 129754 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || ||| |||| || ||| |||| || || || || || || Sbjct 129753 CAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTCCAC 129694 Query 178125 CTTGT 178129 || || Sbjct 129693 CTGGT 129689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725987091572