Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20awamori_20var._20piceus_20[genbank_20GCA_5F001599415.1 _202016-03-01] 35 sequences; 36,062,713 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq2 86.0 5e-12 >seq5 Length=3972810 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| | ||||| ||| | || Sbjct 3010698 ATGCAGATCTTCGTCAAGACTCTTACGGGAAAGACGATCACATTGGAAGTTGAATCTTCC 3010639 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || |||||||||||||| || ||||| || || || Sbjct 3010638 GACACCATCGATAACGTTAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCGGACCAG 3010579 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||| | |||||| ||| ||| | ||||| |||||| Sbjct 3010578 CAGCGTTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACCTTGTCCGACTACAAC 3010519 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||| ||| Sbjct 3010518 ATTCAGAAGGAATCGACC 3010501 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| ||||| | | || || | ||| || | || Sbjct 3010902 ACCGGAAAGACTATCACCCTTGAGGTGGAGTCTTCTGACACTATCGACAATGTGAAGACC 3010843 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || ||||| || || ||||| || || || || || Sbjct 3010842 AAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGAAAG 3010783 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | || || |||||||| ||||| |||||||| Sbjct 3010782 CAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATCCAAAAGGAATCCAC 3010730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || | | ||||||| | ||| | | || Sbjct 3011204 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGCGATACCATCGACAACGTTAAGACC 3011145 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || ||||| || || || || || Sbjct 3011144 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTGATCTTCGCTGGAAAG 3011085 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| ||| | || || |||||||| || || || || || | || Sbjct 3011084 CAGCTGGAGGATGGCCGTACCCTGTCTGACTACAACATCCAGAAGGAGTCTACTCTCCAC 3011025 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | || |||| || ||| Sbjct 3011024 CTCGTTCTCCGCCTGCGTGGTGGT 3011001 >seq2 Length=4967832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || || || || || | | ||| ||| | Sbjct 3523910 TTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCAT 3523969 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || |||||||||||||| || || ||||| || ||||| Sbjct 3523970 CGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGTATCCCCCCGGATCAGCAGCGTCT 3524029 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| || || || || ||| | |||||| ||||||| | ||| |||||||| || || Sbjct 3524030 TATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAA 3524089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727820959775