Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20awamori_20var._20piceus_20[genbank_20GCA_5F001599415.1 _202016-03-01] 35 sequences; 36,062,713 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10 156 9e-33 seq1 127 4e-24 >seq10 Length=610536 Score = 156 bits (172), Expect = 9e-33 Identities = 278/402 (69%), Gaps = 8/402 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||| ||| |||| ||||| ||||||||||||||||||||| ||| Sbjct 109831 TCAAAGAAGTTGGTCTTACCCGCCAGCGAGATCGACTCCATGAAGTCGAAGGGGTTCGTG 109890 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| | ||| | |||||| || || || | |||||| || || ||||| | Sbjct 109891 GCGTTGTAGTACTTCTTGTTGCCAAGGGCCACCAACAGGCGGTCCGCGACGAACTCGATG 109950 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| | |||||||||||| | || | ||| || | || ||| | | Sbjct 109951 TACTGGCACATCAGCTTAGAGTTCATGCCCAGCAGAGCACAGGGCAGAGCGTCAGTCAGG 110010 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || || | || ||||| | | || ||| ||||| | | | | Sbjct 110011 AACTCCTGCTCAATGCCGACGGCCTCGACGATGATGTCCTCAACAACCTGCTTGCTGGGG 110070 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| ||| | ||| ||| || | | || | |||||||||||| || Sbjct 110071 C-GGTTGTT---CAGGTGGGAGAACAACAGGCAGGCGAAGTCGGTGTGCAGACCCTCATC 110126 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||||| | ||| |||||||| | ||||| ||| ||||||| Sbjct 110127 ACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCA 110186 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| | ||||| || ||||| | | |||||| || Sbjct 110187 GAAGATGGAAGCGAAGGAACCGGAGAAGAAAATACCCTCCAC 110228 >seq1 Length=6182763 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| || || || |||| ||||||||||| ||| Sbjct 541341 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTGGCTTACGGTGCCAAGATTCTGCTGAAC 541400 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| ||||| | |||||||||| | || || ||||| |||| ||||| || | Sbjct 541401 CAGACCAGCCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTGCTCGGCCCCAACGGTACC 541460 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| |||||| ||||| ||||| |||| ||||| || || || || || Sbjct 541461 GGTAAGACCACTCTCATGCGTGCCATCAACAACGAGCAGCTTGAGGGCTTCCCCAAGAAG 541520 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 |||||| | ||| || || || ||||||||| Sbjct 541521 GATGAGGTCAAGACCGTCTACGTTGAGCACGAC 541553 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCC--ATTCTACTGCGTG 279759 || || || ||||| ||||||||||||||||| || | || ||| ||| | | | Sbjct 541701 TCCCTCTCTGGTGGATGGAAGATGAAGCTGGCTCTGGCCCGTGCCGTGTTCGAGTCC--C 541758 Query 279760 CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGC 279819 ||||| |||| ||||| |||||||| ||||||||| ||||| || ||||| |||||| Sbjct 541759 CCGATATCCTGCTGCTCGATGAGCCTACCAACCACTTGGACGTCAAGAACGTCGCCTGGT 541818 Query 279820 TAGTGTCCTACCT 279832 | | | |||||| Sbjct 541819 TGGAGAACTACCT 541831 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 542745 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 542804 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | ||||| || |||||||| ||||||||||| ||||| |||||||| || Sbjct 542805 TCT-TGGCAGCGTCCTCATGTCATCGTTCTGGACGAGCCTACTAACTACCTGGACCGTGA 542863 Query 280823 GAGCCTGGGCGCTCTG 280838 || || |||||| Sbjct 542864 TTCTCTCGGTGCTCTG 542879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836339079435