Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20awamori_20var._20piceus_20[genbank_20GCA_5F001599415.1 _202016-03-01] 35 sequences; 36,062,713 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 1e-12 seq8 84.2 2e-11 >seq4 Length=4068578 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/188 (73%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 48504 GAAGCTCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGC 48563 |||| |||| |||||| | ||||||| ||| | || |||| || |||||||| || Sbjct 1005300 GAAGTTCGTGAAGGTGCGCATGAGGACGACCAAGATTCCCCAGATTGGAGACAAGTTCGC 1005359 Query 48564 GTC-CTTCACGGCGCAAAAGGGGAC-ATGTGGAGCCGTCCTGACC--CAGGAGGACATGC 48619 || | |||||| |||||||| || || | | | || ||| ||||| ||||||| Sbjct 1005360 CTCTCGTCACGGA-CAAAAGGGTACCATCGGTATCA---CTTACCGTCAGGAAGACATGC 1005415 Query 48620 CCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATCAACCCCCACGCCTTTCCCTCC 48678 | ||| ||| || ||| ||||| ||| | ||||||||||| |||||| |||||||| Sbjct 1005416 CTTTCACTCGGGAGGGTGTG-TGCCCTGACTTGATCATCAACCCTCACGCCATTCCCTCC 1005474 Query 48679 AGGATGAC 48686 | ||||| Sbjct 1005475 CGTATGAC 1005482 >seq8 Length=2413218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 ||| || || |||||||| ||||||||||| |||||||| || || ||||| || |||| Sbjct 1408544 GTATTCCGCCCCGAAATGTCTCCATTGGAAGCCGTACACGGGCCCTAGGTCGCCGACTTC 1408603 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 || |||| || || ||||| | | || | || |||||| |||||||||| || Sbjct 1408604 CCGGTGCGAGAGTCCTACTTTGTCGAGGTATTCGCGCGAGCCGTTGCCGTCCCAGATTTT 1408663 Query 27618 TACCCC--CTTCTCGGAGAGCT-CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 27674 | ||| | || | ||| | | | |||| | ||| || || |||||| || || Sbjct 1408664 AATCCCGGCGTCACTGAGGGGTACGGAGGAGGTCGTG---CCGGAGATGAACCAGAGGAG 1408720 Query 27675 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 || | | |||||| | ||||| | ||||| || |||||||| Sbjct 1408721 TTCGGCGAGGACGGCGCGCAGGAAGACGCGTTTGGTGGTTAGGAGGGG 1408768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507042382085