Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20calidoustus_20[genbank_20GCA_5F001511075.1_202016-01- 07] 78 sequences; 41,102,685 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 seq3 82.4 8e-11 >seq5 Length=3432170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||||||||||| |||||||| || ||| Sbjct 765380 CCACCACGCAGACGAAGCACGAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGAA 765439 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || |||||||| || || ||||||| ||||| ||||| || || Sbjct 765440 AGGGTACGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAGGCGTTGTTGATCAGGGGGA 765499 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | || || || | | || | |||||| ||| ||| || Sbjct 765500 ATGCCCTCCTTATC-CTGAATCTTGGTCTTGACGTTATCGATGGTGTCGCTGGACTCGAC 765558 Query 139717 CTCAACGGTCACCGTCTTGCCGGT 139740 ||||| ||| | |||||||| || Sbjct 765559 CTCAAGGGTGATGGTCTTGCCAGT 765582 >seq3 Length=4187442 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||||||| |||||||| ||||| | ||||| ||| | || | | | ||| Sbjct 3256290 GAGGCCGTCTCTATTGAAAAGGAGTTCCTCACGGATGCTCTCCCTTGCGCCCTCCTCGGC 3256231 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||| | | | |||||| ||||||||||||| || || ||| | ||| || | Sbjct 3256230 ATGAACTCTAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGACCGCCTGCTGGTTGCT 3256171 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 ||||| | ||| |||| || || ||||||||| || ||| | ||| || Sbjct 3256170 CTCGGCAACAAGAAGTACTTCAACGCCACCAACCCCTTTGACTTCATGGAGTCCATTTCT 3256111 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| || || || ||||| ||||||| ||||| || || ||| Sbjct 3256110 CTCGCCGGTAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTAC 3256066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063516337600