Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20calidoustus_20[genbank_20GCA_5F001511075.1_202016-01- 07] 78 sequences; 41,102,685 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 2e-11 seq5 82.4 6e-11 >seq3 Length=4187442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 19401 GGTTTTCATGTGCACGAGTTTGGTGATACCAGCAACGGGTGCACGTCAGCAGGCGAGCAT 19460 || || ||| | ||| |||||||||| | || |||||| ||||| || |||||| || Sbjct 2644896 GGCTTCCATATCCACCAGTTTGGTGACAACACCAACGGCTGCACCTCTGCAGGCCCCCAC 2644837 Query 19461 TTTAACCCCACGCATCAACAGC-ATGGTGCCCCCGACGCCGCAGAGCGGCACGTTGGTGA 19519 || |||||| | ||| | | ||||||| ||||| | | | || ||||||||||| Sbjct 2644836 TTCAACCCCTT-CGGCAAGACCCATGGTGCTCCCGAGGATGAGGTCCGCCACGTTGGTGA 2644778 Query 19520 CCTGGGCAACGTGCGCTCCG 19539 |||||||||| | ||| ||| Sbjct 2644777 CCTGGGCAACTTCCGCACCG 2644758 >seq5 Length=3432170 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||| ||||| || ||||||||||| | | || | || || | ||| Sbjct 764875 TGGAGCGTGGATTCCTTCTGAATGTTGTAGTCCGAGAGTGTGCGACCATCTTCAAGTTGC 764934 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || |||| || ||||| || ||| ||| | ||||| ||||| ||| | Sbjct 764935 TTTCCAGCGAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCTTGAATCTTT 764994 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | |||| |||| ||||||||| ||||| || Sbjct 764995 GTCTTTACGTTGTCGATTGTGTCGGATGACTCCACCTCCAAGGTGATGGTCTTTCCTGTA 765054 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| Sbjct 765055 AGAGTCTTGACAAAGATTTGCAT 765077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087614913220