Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20calidoustus_20[genbank_20GCA_5F001511075.1_202016-01- 07] 78 sequences; 41,102,685 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq60 140 2e-28 seq3 89.7 3e-13 seq30 86.0 4e-12 >seq60 Length=3881 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 78 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 137 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 138 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 172 >seq3 Length=4187442 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/89 (82%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 |||||||| | ||||||||||||||||||||||||||||| | ||||||||| Sbjct 1295934 AGCCCGTTTTCCCAGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGCGAATCTCGTT 1295993 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||| ||||||||||||||||| |||| Sbjct 1295994 AATCAACTCATGCGCGTCACTAATGAGAT 1296022 >seq30 Length=162096 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/90 (81%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||| | ||||||||||| |||||||||||||||||| || |||||||| Sbjct 54251 AAGCCTGTTTTCCCGGCTGTGGTTTAGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 54192 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 ||||| || |||||||||||||| |||| Sbjct 54191 TAATCAACTCTTGCGCGTCACTAATGAGAT 54162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946881590818