Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20fumigatus_20var._20RP- 2014_20[genbank_20GCA_5F000731615.1_202014-07-18] 671 sequences; 27,355,096 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq596 111 1e-19 >seq596 Length=181484 Score = 111 bits (122), Expect = 1e-19 Identities = 381/580 (66%), Gaps = 37/580 (6%) Strand=Plus/Minus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCA-CAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 || || || || ||||||| ||| || | || ||| || ||| |||| |||| | || Sbjct 64545 TACACATGCGCATCACCCATGGTATGAATCAGAGTG-CCGGGGTTCAGATCCGTCGCATG 64487 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 || | | || |||||| || || || || ||||| || || || || || ||||| Sbjct 64486 GGCCAGTATATGCGTCAGCAGCGCATACGACGCAATGTTGAATGGCACACCAAGCCCCAT 64427 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAG-CTCCCCCCG------AGCC------- 21110 ||| || | || |||||| | || || || |||||| | |||| Sbjct 64426 ATCGCACGAACGTTGATACAGCAGACACGATAGGCTCCCCTTGTTGTCCAGCCCATTAGG 64367 Query 21111 -------ACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGT 21162 || || ||||| | |||| | ||||| || ||||| |||||| | || | Sbjct 64366 ATATGAGACATAGAACTG-CGCAAACATATGACAGGGCGGGAGCGCCATCTTCTTCAGAT 64308 Query 21163 CCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGAT 21222 |||| ||||||||||| | ||| | |||||| || || |||| | | || | || | Sbjct 64307 CCGCCGGGTTCCACGCACTCATGATGATGCGGCGGTCAAAGGGC-GTTTCTT--TCAGCT 64251 Query 21223 C---CACCACGTAACGC-AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCC 21278 ||| || | ||| |||||||| || ||||| || ||| | | | ||| | Sbjct 64250 TGCGCACAACCTC-CGCGAGCTGGTCGACGCCCTGGCCTGTGTAATCCGTCTTGGCGTCG 64192 Query 21279 CTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCG 21338 ||||||| ||||| ||||| | |||||||||||| ||||| || || |||||||| | Sbjct 64191 ATGTACTCGGCCCCGAAATGCCGCCACTGGAACCCATACACAGGGCCTAGATCGCCGACC 64132 Query 21339 CGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAAT 21397 ||||| |||| ||||| | | ||| || ||||| |||| ||||||| || Sbjct 64131 TCGCGGTGCCCG-AGCCCAACTTTGTCCAGGAACTCGCGGCTGCCGTTACCGTCCCAGAT 64073 Query 21398 TTTTACGCC-GCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCA 21456 ||| | ||| || | ||| || | ||||| |||| | || ||| ||||| || | Sbjct 64072 TTTGATGCCTGCTTC-CGAGAGGGGGATGGAGGAGGTGCATCCGGAGATGAACCAGAGGA 64014 Query 21457 ACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496 ||| | | |||| | | | || || | ||||||||| Sbjct 64013 GCTCGGCGATGACGGCACGCAGGAAAACGCGTTTGGTGGT 63974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772501728080