Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20fumigatus_20var._20fumigatus_20[genbank_20GCA_5F001599 455.1_202016-03-01] 26 sequences; 28,388,732 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3 129 4e-25 seq1 86.0 4e-12 >seq3 Length=3005802 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || ||||| | |||||||||||| | || || || || || || ||||| |||| Sbjct 1936214 ATCCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTTTGAATATTGTAATCGG 1936155 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | || | | || ||||||||||| || ||||| ||||| ||||||||||| | Sbjct 1936154 AGAGGGTCCTCCCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAG 1936095 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||| ||| | | | | |||| |||| || || | Sbjct 1936094 GGATGCCCTCCTTGTCTTGGATCTTGCTCTTCACGTTGTCAATCGTGTCGGAGGACTCCA 1936035 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || ||||| || ||||||||||| || || ||||||||||| Sbjct 1936034 CCTCCAGGGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 1935986 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| ||| ||||| ||||| || ||||| || ||| | || Sbjct 1935433 AGAACCAGGTGCAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCC 1935374 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| | ||||||||||| || | | |||||| || Sbjct 1935373 TCGAGCTGCTTGCCAGCGAAAATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 1935314 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | || ||||| |||| |||||||| Sbjct 1935313 TGAATCTTCGACTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCCAAGGTGATGGTC 1935254 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| |||||||| || || || |||||||| Sbjct 1935253 TTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 1935222 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 || || ||||| | ||| ||| ||||| ||||| |||||||||| | || ||| | || Sbjct 1935741 AGGACGAGGTGGAGAGTCGATTCCTTCTGAATGTTATAGTCGGACAAGGTG-CGGCCATC 1935683 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||||||||||||| |||||||| || ||||||||||| || | | ||||||||| Sbjct 1935682 CTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 1935623 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | |||| | ||||| || || | || ||||| Sbjct 1935622 CTGGATCTTCGACTTAACGTTATCAATGGTATCGCTGGATTCCACCTCGAGAGTAATGGT 1935563 Query 34357 TTTGCCGGTGAGAGTTTTCAC 34377 ||||| ||||| || || || Sbjct 1935562 CTTGCCAGTGAGGGTCTTGAC 1935542 >seq1 Length=3959504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 2216342 CCACCACGCAGACGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 2216401 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||||||| ||| Sbjct 2216402 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGG 2216461 Query 34283 ACGCTCTCCTTGTCGGCTATCT 34304 | | ||||||||| | | ||| Sbjct 2216462 ATTCCCTCCTTGTCTGTTGTCT 2216483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071897626560