Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20fumigatus_20var._20fumigatus_20[genbank_20GCA_5F001599 455.1_202016-03-01] 26 sequences; 28,388,732 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 178 3e-39 seq7 138 2e-27 seq12 95.1 3e-14 seq1 87.8 4e-12 >seq3 Length=3005802 Score = 178 bits (196), Expect = 3e-39 Identities = 180/229 (79%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 ||||||||||| || || |||||||| | ||| ||| |||||||| ||||| |||| | Sbjct 1935984 CCACCACGCAGACGGAGGACCAGATGCAGTGTGGATTCCTTTTGGATATTGTAATCAGAC 1935925 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || ||||| || || |||||||| | ||| ||||| ||| || Sbjct 1935924 AAG-GTACGGCCATCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGTTGATCAGGAGG 1935866 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||| || |||||||| ||| || || | ||||| ||||| |||| || | Sbjct 1935865 GATACCCTCCTTATCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCTGAAGACTCTA 1935807 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||||| ||||| ||||| | |||||||||||| || ||||| Sbjct 1935806 CTTCTAATGTGATAGTCTTTCCCGTGAGAGTCTTAACGAAGATTTGCAT 1935758 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | || ||| || |||||||| || || | | Sbjct 1935448 CCACCACGAAGACGGAGAACCAGGTGCAGAGTAGATTCCTTCTGGATGTTATAATCGGAA 1935389 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || ||||| || || |||||| || Sbjct 1935388 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAAGCGCTGCTGGTCAGGAGGG 1935329 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| | || || | || |||||||| | ||||| Sbjct 1935328 ATACCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCGCTGGACTCGACC 1935269 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| | |||||| ||||| |||||||| Sbjct 1935268 TCCAAGGTGATGGTCTTGCCCGTGAGAGTCTTGACGAAAATCTGCAT 1935222 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | |||||| || ||||| || ||||| || | Sbjct 1936212 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTTTGAATATTGTAATCGGAG 1936153 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || | || || || || ||||| | ||| || |||||| || Sbjct 1936152 AGGGTCCTCCCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 1936093 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||| ||||| || ||| | || || ||||| || | || || Sbjct 1936092 ATGCCCTCCTTGTCTTGGATC-TTGCTCTTCACGTTGTCAATCGTGTCGGAGGACTCCAC 1936034 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || || | |||||| ||||| |||||||| Sbjct 1936033 CTCCAGGGTAATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 1935986 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||||||||| || ||||| || || || | || ||| || || ||||| ||||| | Sbjct 1935757 ACCACCACGAAGACGAAGGACGAGGTGGAGAGTCGATTCCTTCTGAATGTTATAGTCGGA 1935698 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| | || || || || || |||| ||| || |||||| | Sbjct 1935697 CAAG-GTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAG 1935639 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | |||||||||||||| |||||||| | || ||| |||| || || || | ||| | Sbjct 1935638 GGATACCCTCCTTGTCCTGGATCTTCGACTTAACGTTATCAATGGTATCGCTGGATTCCA 1935579 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | |||||||| || ||||| || || | ||||| |||| Sbjct 1935578 CCTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTGACGA 1935540 >seq7 Length=1968185 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||| || |||||||||||||| || || || || || |||||| Sbjct 1069536 TTCTGAATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 1069477 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || |||||| ||||||||||||||||| |||||||| || || ||| | ||| Sbjct 1069476 AGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 1069417 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| | || || ||||| || || ||||||||||||| ||||| ||||| Sbjct 1069416 ATGGTGTCGCTCGACTCAACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 1069358 >seq12 Length=928831 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 315656 TAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCT 315715 |||| | || || ||||| ||||| |||| || |||| | || |||||| ||| | Sbjct 583527 TAATGATAACGACACCACCCTCGAAAGTCTTGAGAGCCTTGGACAGGGCACCCAGAGAGT 583468 Query 315716 CGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAG 315775 | ||||| | | ||||||| ||||| || || ||||||||||| || | ||||| ||| Sbjct 583467 CACGGTCGAGATAGTTGGTGGGCTCGTCGAGGACGATGACGTGAGGACGCTGCCA-CGAG 583409 Query 315776 C-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGA 315834 | |||| ||| |||| ||| | || ||||| ||||| || || || ||||| ||| Sbjct 583408 CAGGCGGCGAGGACGACCTTGACACGCTGACCACCGGACAGACCGCGCATACGAGAGTGA 583349 Query 315835 G 315835 | Sbjct 583348 G 583348 >seq1 Length=3959504 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || || || || | || || || |||||||||||||||| Sbjct 2216341 ACCACCACGCAGACGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 2216400 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || || || ||||||| ||| || ||||| || Sbjct 2216401 GAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGGGG 2216460 Query 282992 AATACCCTCCTTGTCT 283007 || |||||||||||| Sbjct 2216461 GATTCCCTCCTTGTCT 2216476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738851305004