Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_004066.1 Length=36798 Score E Sequences producing significant alignments: (Bits) Value seq489 639 3e-179 seq615 369 9e-98 >seq489 Length=546 Score = 639 bits (708), Expect = 3e-179 Identities = 465/546 (85%), Gaps = 36/546 (7%) Strand=Plus/Minus Query 2636 GGGCTTTTACATACACTGTATAGTTTCCAGTTGAACCAGTACTCCAATTATCTGAACGCA 2695 ||||||||||||| ||||||||||| ||| |||| ||||| |||||| ||||||||||| Sbjct 546 GGGCTTTTACATAAACTGTATAGTTATCAGATGAATCAGTATTCCAATCATCTGAACGCA 487 Query 2696 TCATTTCTCCAACAAAATGATATTCTTCTCCAGATTTTAAAGTTCCATTATTTGTTTTTT 2755 |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 486 TCATTTCTCCAACAAAATGATATTTTTCTCCAGATTTTAAAGTTCCATTATTTTCTTTTT 427 Query 2756 CAACAAGCTTATCTGGGGTTGTTTCAATAGGTTTTGGAG--------------------- 2794 ||| ||||| ||||||||||||||||||||||| || || Sbjct 426 CAATAAGCTCATCTGGGGTTGTTTCAATAGGTTGTGAAGCCTGTTTTTCTTTTTTAGTAG 367 Query 2795 TAAC---------TGAGG------TTTCTTGTTTAGTAGTATCTTTTTCCTGTGAAGCCT 2839 || | ||| | |||||| ||||||| |||| |||| ||||||||||| Sbjct 366 TATCCTTTTTCTGTGAAGCTTGTTTTTCTTTTTTAGTAATATCCTTTTTCTGTGAAGCCT 307 Query 2840 GtttttctttttttGAACTAGCAGAGGTAATGGATTGGCTAGTTTTTGTTACTTTGGGTG 2899 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 306 GTTTTTCTTTTTTTGAACTATCAGAGGTAATGGATTGGCTAGTTTTTGTTACTTTGGGTG 247 Query 2900 TTGCTTCTGATTTAGAATCTGTATTTGTTGTATTCGAAGTAACTGCACTGCCAATAATCG 2959 ||||||||||||||||||||||||||||||||| | |||| || || ||||||||| | Sbjct 246 TTGCTTCTGATTTAGAATCTGTATTTGTTGTATCAGGAGTAGCTATACAGCCAATAATTG 187 Query 2960 AAATGACAATCAGTGATATAGCAACTATGAAAGATGTTTTTGGTTTGAATTTTGTATACT 3019 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 186 AAATGAAAATCAGTGATGTAGCAACTATGAAAGATGTTTTTGGTTTGAATTTTGTATACT 127 Query 3020 GTCCTCtttttttAGATTTTACAAATGAATATAAAGCATAACCAAATATTATCACGCCTG 3079 |||||||| |||||||||||||||| |||||||||||||||||| ||||||| | |||| Sbjct 126 GTCCTCTTATTTTAGATTTTACAAACGAATATAAAGCATAACCATATATTATAAATCCTG 67 Query 3080 AGATGAGGGTTATTGGCCACAATTTAAATAGTAAGCTTATACATATTATAAAAACTATAA 3139 |||| | ||||||| |||||||| || |||||||||||||||||||||||||| || || Sbjct 66 AGATAAAGGTTATTTGCCACAATATAGTTAGTAAGCTTATACATATTATAAAAATTAGAA 7 Query 3140 TTTTAA 3145 |||||| Sbjct 6 TTTTAA 1 >seq615 Length=354 Score = 369 bits (408), Expect = 9e-98 Identities = 239/262 (91%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 2141 TGACTTCAGAAGGATCCATAATTGAACGGTTTTCTCCGATTTTTACACCTGAAATATAAT 2200 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 TGACTTCAGAAGGATTCATAATTGAACGGTTTTCTCCGATTTTTACACCTGAAATATAAT 204 Query 2201 AATTAAATTGAGGATTATTTTCTCCTTTGGAATAAGCTATCTTAGCTAGGTTTTCATTTA 2260 ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| Sbjct 203 AATGAAATTGAGGATTATTTTCTCCTTTGGAATTTGCTATCTTAACTAGGTTTTCGTTTA 144 Query 2261 AAGTTTGGACTAGACTCTTTATTTCCATATTTGAATAAGATGCAAAAATAATATTCAATT 2320 ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 143 AAGTTTGAACTAGACTCTTTATTTCCATATTTGAATAAGATGCAAAAGCAATATTCAATT 84 Query 2321 GAACATCAGCAACTGGGTAAATTGAACCTTTGTCTATACTGTCAATGGCAGTATTACCTA 2380 ||||| |||| |||||||| || |||| ||||||||||||||||||||| |||||| Sbjct 83 TAACATTAGCAGATGGGTAAACATAATCTTTTTCTATACTGTCAATGGCAGTAGTACCTA 24 Query 2381 AATTCTCATTTACAGTTTGGGC 2402 || | ||||||||||||||| Sbjct 23 AACTAGTATTTACAGTTTGGGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117631065487280