Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 109 1e-18 seq1 107 5e-18 >seq3 Length=2393285 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || ||| || || || || ||||||| Sbjct 1619302 CCACCACGGAGACGAAGGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAC 1619361 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || || || || || || ||||||| |||||| || || ||| Sbjct 1619362 AAGGTACGGCCATCCTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGG---TCCGGG 1619418 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || || || | || ||||| || || | ||| ||||| Sbjct 1619419 GGAATGCCTTCCTTGTCTTGAATCTTGGTCTTAACGTTATCGATGGTGTCGGAAGATTCA 1619478 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||||||||| || || ||||| |||||||| |||||||| Sbjct 1619479 ACTTCCAATGTGATCGTCTTGCCCGTAAGAGTTTTGACGAAGATCTGCAT 1619528 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || ||||| Sbjct 1619831 CCACCACGCAGGCGGAGAACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCACTA 1619890 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||||||||| || || ||| Sbjct 1619891 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCGGGAGGG 1619950 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || | || || || || || | ||||||||| || || Sbjct 1619951 ATGCCCTCCTTATCCTGGATCTTGGTCTTAACATTGTCGATGGTATCGCTCGACTCGACC 1620010 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| ||||| ||||| Sbjct 1620011 TCGAGGGTGATGGTCTTGCCGGT 1620033 >seq1 Length=3905891 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || |||||| || ||||| || || || | || || || |||||||| Sbjct 455432 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATA 455491 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| ||| ||||| || || || |||||||| || | || ||||| || Sbjct 455492 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 455551 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | |||||||| || || ||||| || || ||||| || || || ||||||||||| Sbjct 455552 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 455610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644288518582