Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 140 3e-28 seq3 105 7e-18 seq1 93.3 4e-14 seq4 87.8 2e-12 seq2 84.2 2e-11 >seq8 Length=1782630 Score = 140 bits (154), Expect = 3e-28 Identities = 347/520 (67%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| || ||| ||||| | ||||| || ||||||||| || |||| | Sbjct 104746 GTCCCCTGCATTGCCAAGAAGGCCGATTGGGCCATCAAGTGGATCCAG---GACAGGGAA 104690 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | || | || |||| | || || ||||| || ||||| | || || ||||| Sbjct 104689 TCTACCTTCGCTCAGCGTCTCGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCTCCGGT 104630 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||| || ||||||| | | || | | || | ||||| || ||||| ||| | Sbjct 104629 TCCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCC 104570 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || || || ||||| || |||||||| ||||| || ||||| | | | Sbjct 104569 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTGTTGTTCT-- 104512 Query 52563 ACGCGCGTGACCGAAAAATTGGATTCGGA--CACGATCCTGAG--CATGTTCAAGGAGGC 52618 | | | ||| | || | | | || | | |||| ||| || ||||| Sbjct 104511 -CCCACCTGAAC----AACCGCCCCAGCAAGCAGGTTGTTGAGGACATCATCGTCGAGGC 104457 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || | || || ||||||| | || | ||| ||||| | || ||||||||||| Sbjct 104456 CGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCTGCCCTGTGCTCTCCTGGGCATGAA 104397 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | | || |||||| ||||||||||||| || ||||| || ||||||||| ||||| Sbjct 104396 CTCCAAGCTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGTTGGTGGCCCTCGG 104337 Query 52739 GCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 || | | ||||||| |||||| ||| || || || || ||| | || ||||| | Sbjct 104336 -CAACAAGAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGTCGATCTCGCTGG 104278 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| ||||||||||| ||||||||||| || || || || Sbjct 104277 CGGGTAAGACCAACTTCTTCGAGAAGCGGGTGGGTGACTA 104238 >seq3 Length=2393285 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| || ||||| ||||| | || ||||| | | Sbjct 1619335 GATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGGCCATCCTCCAACTGCTTACCAGCA 1619394 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | |||||| |||||||| || || ||||| ||||| ||| | || || |||| Sbjct 1619395 AAGATCAAACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTC-TTGAATCTTGGTCTTAAC 1619453 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| || || || || | || | ||| || || || |||||||| Sbjct 1619454 GTTATCGATGGTGTCGGAAGATTCAACTTCCAATGTGATCGTCTTGCCCGTAAGAGTTTT 1619513 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1619514 GACGAAGATCTGCAT 1619528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| || ||||| ||||| || || || || | Sbjct 1619563 GATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTTCCCGCG 1619622 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| |||||||| ||||| ||||| ||||| || ||||| ||| | || || || Sbjct 1619623 AAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCTTAGTCTTCAC 1619681 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||||||||| | || | || || || ||||| || | Sbjct 1619682 ATTG-TCGATAGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTTCCGGTCAGGGTCT 1619740 Query 138599 TTAC 138602 | || Sbjct 1619741 TGAC 1619744 >seq1 Length=3905891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||||||| || || ||||| || || ||||| | ||| Sbjct 455430 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGA 455489 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTG 138542 | |||||||| || ||||| || ||||| || ||||| || | || || || | ||| Sbjct 455490 TAAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTC-CTGGATCTTGGTCTTGACGTTG 455548 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| ||||||| || |||| || | || ||||| || || || || || Sbjct 455549 -TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGAC 455607 Query 138603 AAAA 138606 ||| Sbjct 455608 GAAA 455611 >seq4 Length=2386931 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 57300 GGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTC 57359 || || || ||| || | ||| |||||||| ||| || | | | |||||| ||||| Sbjct 1615724 GGTCTTGAAGTTACCAAGGTCACCGACGTGACGCTCGTCGTCCTCGGGAGCACCGTGGGT 1615665 Query 57360 GCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAA 57419 ||||| |||||| ||||| ||| || || |||||||||||| || |||| ||||| Sbjct 1615664 CTTGCCGAAGGGGTTGAAGTGAGGGCCAGCGGAGGTGCAGCCGTTGGTGTTGTCACCGAA 1615605 Query 57420 CTCGTGAACGTGAAATCC 57437 || ||| ||||| || || Sbjct 1615604 CTGGTGGACGTGGAAGCC 1615587 >seq2 Length=2822020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||||||||| || ||||| | Sbjct 1631921 GACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCG 1631862 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| |||||||| |||||||| || ||||| || ||||| Sbjct 1631861 AAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 1631821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258250005680