Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq8 102 8e-17 seq1 98.7 9e-16 seq4 84.2 2e-11 >seq3 Length=2393285 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||| || ||| || ||||| || |||||| | Sbjct 1619109 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTACGTCCATCTTCCAGCTGCTTACCAGCGAA 1619168 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||||||||| || || ||||||||||| || || || | ||||| | Sbjct 1619169 GATGAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGAATCTTGTTCTTGACGTT 1619228 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| |||| ||||| || || | || | ||| |||||||| ||||| || || Sbjct 1619229 ATCAATGGTATCCGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCGGTGAGAGTCTTCAC 1619288 Query 127102 AAAAATCTGCAT 127113 || |||||||| Sbjct 1619289 GAAGATCTGCAT 1619300 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || | | ||||| ||| || ||||| |||||| Sbjct 1619861 GTAGACTCCTTCTGGATGTTGTAGTCACTAAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 1619920 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || ||||| |||||||| ||||||||||| ||| ||| || ||| Sbjct 1619921 GCGAAGATCAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTGGTCTTA 1619980 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||| || | |||||| |||| ||| | || |||||||| Sbjct 1619981 ACATTGTCGATGGTATCGCTCGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1620033 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || ||||| || ||||| || || || || ||| || ||||| ||||| Sbjct 1619560 GTGGATTCCTTTTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTTCCC 1619619 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| || |||||||||||| || || ||| Sbjct 1619620 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTAGTCTTC 1619679 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || || | ||| | || || |||||||| || Sbjct 1619680 ACATTGTCGATAGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTTCCGGTCAGGGTC 1619739 Query 127097 TTTAC 127101 || || Sbjct 1619740 TTGAC 1619744 >seq8 Length=1782630 Score = 102 bits (112), Expect = 8e-17 Identities = 247/369 (67%), Gaps = 29/369 (8%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| || || || || ||||||||| ||||| | ||||| || ||||||||| || Sbjct 104590 ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGAC 104531 Query 47283 TTTGCCTGTCTCTA---CTACAACACT--AGAGTCGATCAA--AAGTTGGACGTGCCCAC 47335 || ||||| || | || | || || | | || | | ||| || || Sbjct 104530 TTCGCCTGCCTGTTGTTCTCCCAC-CTGAACAACCGCCCCAGCAAGCAGGTTGT------ 104478 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 | || ||||| | | ||| ||||||| ||||||| |||||| | | || ||||| Sbjct 104477 --TGAG-GACATCATCGTCGAGGCCGTCGGCATTGAGCAGGAGTTCCTGACTGACGCTCT 104421 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 |||| || | |||| |||||| | || ||||| | |||||||||| || ||||| Sbjct 104420 GCCCTGTGCTCTCCTGGGCATGAACTCCAAGCTGATGTGCCAGTACATCGAGTTCGTCGC 104361 Query 47456 CGACCGCCTGCTCGT-----TCAGCTA-AAGTATCCCAAGATTTACCACACCGAGAATCC 47509 ||||||||| | || || || | ||| ||| ||| || || || || Sbjct 104360 GGACCGCCTGTTGGTGGCCCTCGGCAACAAG------AAGTACTACAACGCCACCAACCC 104307 Query 47510 ATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||||| || ||| | || ||||| | ||| ||||||||||| ||||||||||| || Sbjct 104306 CTTCGACTTCATGGAGTCGATCTCGCTGGCGGGTAAGACCAACTTCTTCGAGAAGCGGGT 104247 Query 47570 CGGCGAATA 47578 || || || Sbjct 104246 GGGTGACTA 104238 >seq1 Length=3905891 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||||| ||| || ||||| || |||||| |||| Sbjct 455432 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATA 455491 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | ||||||||||| || || || |||||||||||| ||| || ||||| |||| || Sbjct 455492 AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGTCTTGACGTTG-TC 455550 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | |||||| |||| ||| | || || || || || || || || || Sbjct 455551 GATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 455610 Query 127105 A 127105 | Sbjct 455611 A 455611 >seq4 Length=2386931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 50662 GTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCCAA 50721 ||| || || || |||||||| || ||| || | | |||||| |||||| | ||| || Sbjct 1615715 GTTACCAAGGTCACCGACGTGACGCTCGTCGTCCTCGGGAGCACCGTGGGTCTTGCCGAA 1615656 Query 50722 CGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAATTCGTGCAC 50781 || || ||||| ||| || || |||||||||||| | |||| ||||| | ||| || Sbjct 1615655 GGGGTTGAAGTGAGGGCCAGCGGAGGTGCAGCCGTTGGTGTTGTCACCGAACTGGTGGAC 1615596 Query 50782 GTGGAACCC 50790 |||||| || Sbjct 1615595 GTGGAAGCC 1615587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496823624560