Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 138 3e-27 seq8 107 6e-18 seq2 104 7e-17 >seq3 Length=2393285 Score = 138 bits (152), Expect = 3e-27 Identities = 407/624 (65%), Gaps = 5/624 (1%) Strand=Plus/Plus Query 155910 ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC 155969 ||||||| ||| || | ||| | ||| | || ||||| || || | || | |||| Sbjct 276601 ACACGCTTCATGAACAGATCCGGGGTCCACAGGGCGTAGAACAGATCACGGGC-TCTGAC 276659 Query 155970 -TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 ||||| | ||||| ||||| || || || | ||| || | ||| | || || Sbjct 276660 CTCCTCCTTACCGTGGTTCTTACGGAGATCCAGGAACTCGAAGACATCCGAGTGCCAGGG 276719 Query 156029 CTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGC 156085 ||| || || || || ||| ||| | | | ||||||||||| || || || | || Sbjct 276720 CTCAAGGTAGATGGCGAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACGTATCTGGC 276779 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 ||| || |||||||||| |||||||||| || ||| ||||| || || ||||| || | Sbjct 276780 AGTGTTGTTGAAGACACGAAGCATAGGAACAAGACCGTTGGAGGTACCGTTGGTACCACC 276839 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 ||| | || |||| || || | || | | || || |||||||| | | || Sbjct 276840 AATGTAGGAGCCAGTAGAACGGATGCGGTGCACGTTCAGACCGATACCACCGGCCGTCTT 276899 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || |||||| ||| | ||| | | | ||||| ||||| || || | ||| Sbjct 276900 GGAGATCATAGCGCAAGTCTTCAGAGTGTCGTAGATACCGTCAATGCTGTCCTCCTTCAT 276959 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | || |||| || | || || | || || ||||||||||| || || || Sbjct 276960 GTCGACGAGGAAGCAAGAGGCAAGCTGGGGCTGGGGAGTACCAGCGTTGAACAGAGTCGG 277019 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 | || ||| | || ||||| | |||||| | | ||| ||||| | |||||||| Sbjct 277020 GGAGGCGTGAGTGAAGTACTTCTGAGACATCAAGTTGTAGGTCTCGATGGCCTTCTCAAT 277079 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 | |||||||||| | | || | |||| || ||||| |||||||| | | Sbjct 277080 GTCGCTGCCGTGAATACCAACGGCAACACGCATCAGCAGGTGCTGGGGACGCTCAGCCAC 277139 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAA 156505 | ||| | || ||||| ||||||| || |||| ||| || || ||||| | | | Sbjct 277140 CTTTCCGTTGATCCGCAGCAGGTATGACCGCTCCAAAGTCTTGAAACCGAAGAAGTTGTA 277199 Query 156506 CAGAAAATCACGGTTGTAATCAAT 156529 |||||||||| ||| |||| Sbjct 277200 GTTGAAATCACGGTCGTATACAAT 277223 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATC 155642 ||| ||| |||||| || ||||| || ||| ||| | | ||||| || | |||| Sbjct 276225 AGAGCAAGAGACGCAAGGTTACAGACAGCAACCTCATCCGGAGCACTGTACTCAATAATC 276284 Query 155643 TCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTA 155702 || ||| ||||| || || |||||| || | ||||||||||| || |||| Sbjct 276285 TCGGTGCAGAGGTTGGAGCTACGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTCTTGTTG 276344 Query 155703 CAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT 155758 |||||||||||||| || ||| | ||| | || ||||| |||| || |||||||| Sbjct 276345 CAAGCATCCTTGTACAGCATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCCAGAAT 276400 >seq8 Length=1782630 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 ||||| | || ||||| || || ||||||||||||| | | | || ||| ||| Sbjct 104731 AAGAAGGCCGATTGGGCCATCAAGTGGATCCAGGACAGGGAATCTACCTTCGCTCAGCGT 104672 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 ||||||||||| |||| || ||||| ||||| ||| ||| | ||| || || || Sbjct 104671 CTCGTTGCTTTCGCTGCCGTTGAGGGTATTTTCTTCTCCGGTTCCTTCGCTTCCATCTTC 104612 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || ||||||||| | | ||||| ||| || || ||||| || || || | Sbjct 104611 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 104552 Query 133631 GACGAGGCACTTCACACCGAATTTGCC 133657 ||||||| || |||||||| || ||| Sbjct 104551 GACGAGGGTCTGCACACCGACTTCGCC 104525 >seq2 Length=2822020 Score = 104 bits (114), Expect = 7e-17 Identities = 177/252 (70%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 302595 ACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACC 302654 ||| || || ||||||||| || || || ||||| |||||||| | ||| | | ||| Sbjct 983778 ACGTTGGATGTAACCAGTTTCAGCGGTCTTGACAGCGGTATCAATCAAACCTTCTCTACC 983837 Query 302655 ACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 | ||||||| |||||||| | ||| | |||| | | | | |||| ||| | ||| Sbjct 983838 AGCCATAGCGTGGAAGAAGAACTCGGTGGGGGTCAAACCACGCAGATAA--GAGTTTTCA 983895 Query 302713 ACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 || || ||||| | ||||| || | ||| |||||| ||||| |||| ||| | || | Sbjct 983896 ACAAATCCACGGGATTCGGGAGAGTAATCGTCCTTGGTGAAGTGAGGCAAGGTACGGTAC 983955 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC-GAAATCAT 302831 | | ||| | || ||||||||||| || || ||| ||||| | ||| | | |||| Sbjct 983956 TTGAATCCGAAAGGAATACGCTTTCCTTCGACTGACTGTTGTCCGA-CCACAGCAGTCAT 984014 Query 302832 CTGCGAAATATT 302843 ||| || || || Sbjct 984015 CTGGGAGATGTT 984026 Score = 102 bits (112), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| |||||||| ||| ||||| |||||||| ||||||||| Sbjct 982981 AGAATTTCCTTTAGACGAGGAACACCCAAGGTGACGTT---CTTGGACGAGACACCAGCA 983037 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 ||||||||||| ||||| || | || || | ||||||||||| || || |||| | Sbjct 983038 AAGTGGAAAGTGTTCAGTGTCATCTGCGTGGCAGGCTCACCAATGGACTGAGCAGCAAGC 983097 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 983098 ACACCAACCATTTCGCCAGG 983117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471804984223453