Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001515345.1_202015-12-19] 669 sequences; 34,880,193 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-29 seq8 89.7 6e-13 >seq3 Length=2393285 Score = 145 bits (160), Expect = 1e-29 Identities = 568/892 (64%), Gaps = 66/892 (7%) Strand=Plus/Plus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 || || ||||| ||||||| | | ||||||| | ||| || || || | |||||| Sbjct 276243 TTACAGACAGCAACCTCATCCGGAGCACTGTACTCAATAATCTCGGTGCAGAGGTTGGAG 276302 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || || | ||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct 276303 CTACGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTACAGC 276362 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG-- 111427 ||| |||| | || ||||| ||||| | | |||||||| | ||| | | || | | Sbjct 276363 ATGAAGGGGTTACCAGTCTCGGTCTGAGCCTCCAGAATAGCGTACCACAGCTTCTGAGCC 276422 Query 111428 --GCTGGTACAATGGCGTTGGCC--------CGTCCCT---------------------- 111455 | |||||| | ||| |||| | | ||| Sbjct 276423 TTGATGGTACGACGGCCACGGCCTTCCTTCTCATACCTGCAATACTATTAGCATGGGTCG 276482 Query 111456 ------------CCGCC--TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 111501 ||| | | ||||| |||||| || || ||||| ||||| | Sbjct 276483 CGAATACGCGGACCGGCAAACTTACTTCTCGTAGAGAGCGTCGAACTCATCACCGTAGAC 276542 Query 111502 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAAC 111561 || | | || || || | || || ||||| |||| ||| | ||| ||||||| Sbjct 276543 ATCAGCCAAGCCAGGGGCTTCGTTGGGGCAGAACAGAGTCCAGTCACCGTTCGCCTCAAC 276602 Query 111562 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCT 111620 ||||||||||| || || || ||||||||| | || ||||| | | | || ||| Sbjct 276603 ACGCTTCATGAACAGATCCGGGGTCCACAGGGCGTAGAACAGATCACGGGCTCTGA-CCT 276661 Query 111621 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680 | || | ||| ||||| || | || |||||||| | || ||||| |||||| |||| Sbjct 276662 CCTCCTTACCGTGGTTCTTACGGAGATCCAGGAACTCGAAGACATCCGAGTGCCAGGGCT 276721 Query 111681 CAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCG 111734 |||| |||| |||| || || ||||| ||| | || | || || | | Sbjct 276722 CAAGGTAGATGGCGAAAGCACC---GGGACGCTTGTTGCCACCCTGGTCAACGTATCTGG 276778 Query 111735 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 111794 | ||| ||| || || |||||||| |||| || ||| | || ||| || || || | Sbjct 276779 CAGTGTTGTTGAAGACACGAAGCATAGGAACAAGACCGTTGGAGGTACCGTTGGTACCAC 276838 Query 111795 GAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACT 111854 ||| || | | | | | || | || || || ||||| || ||| || Sbjct 276839 CAATGTAGGAGCCAGTAGAACGGATGCGGTGCACGTTCAGACCGATACCACCGGCCGTCT 276898 Query 111855 TTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 111912 | ||||| | ||||| | | | | ||||| | |||||||||| || ||||||||| Sbjct 276899 TGGAGATCATAGCGCA-AGT-CTTCAGAGTGTCGTAGATACCGTCAATGCTGTCCTCCTT 276956 Query 111913 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 111972 || ||| ||||||||| || | ||| || || |||||||| ||||| || || Sbjct 276957 CATGTCGACGAGGAAGCAAGAGGCAAGCTGGGGCTGGGGAGTACCAGCGTTGAACAGAGT 277016 Query 111973 TGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 112031 || | |||||| |||| ||| | || |||||| || ||| ||||| | | | | Sbjct 277017 CGGGGAGGCGTGAGTGAA-GTACTTCTGAGACATCAAGTTGTAGGTCTCGATGGCCTTCT 277075 Query 112032 CAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||||| ||||| || || | || || ||||| | || || ||| || Sbjct 277076 CAATGTCGCTGCCGTGAATACCAACGGCAACACGCATCAGCAGGTGCTGGGG 277127 >seq8 Length=1782630 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || || || || || || || |||||| ||||| ||||||||||| Sbjct 104537 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACC 104596 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| || ||||||||||| |||||||| || Sbjct 104597 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGAACCGGAGAAGAAAATACCCTCAACGGC 104656 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAACCATTTCATTG 122848 || || |||| || || | ||||||| || || | | | | ||| || || | Sbjct 104657 AGCGAAAGCAACGAGACGCTGAGCGAAGGTAGATTCCCTGT-CCTGGATCCACTTGATGG 104715 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 |||| | |||||||| |||| || || || Sbjct 104716 CCCAATCGGCCTTCTTGGCAATGCAGGGGAC 104746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026748082400